Tc07v2_t012180.1

Overview
NameTc07v2_t012180.1
Unique NameTc07v2_t012180.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length645
Properties
Property NameValue
NoteNucleic acid-binding, OB-fold-like protein isoform 1
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
CommentThe sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
Productexosome complex component csl4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594596
GenbankXM_018124348.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g012180Tc07v2_g012180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p012180.1Tc07v2_p012180.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto376413auto376413Theobroma cacaoexon
exon-auto376414auto376414Theobroma cacaoexon
exon-auto376415auto376415Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto376416auto376416Theobroma cacaoCDS
CDS-auto376417auto376417Theobroma cacaoCDS
CDS-auto376418auto376418Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t012180.1 ID=Tc07v2_t012180.1|Name=Tc07v2_t012180.1|organism=Theobroma cacao|type=mRNA|length=645bp
ATGAAAATTCCGTCGGTGATGACATATGCCGTGAGTAACTTAACCATGGA
GCATTCTATCAACAATTTGATTGAAGTAGAGATAGTAACGCCAGGTGCGG
TGTTGGGAAGAGCGACAAATCTCAAAGCAGGGAAAAGAGCTTATGTAACA
TATCATAACAAGACCATCTACGCTTCCGTCACTAGTTTCCGCTGCATCCA
ATCCCTTCCTCCTGATCACCAGAGATTGATTGCGAAAGTAACTGGTAACA
AAGCCCATGGTCCTGTTTCGGAGCCCGGTTCTGTTGTCATTGCCCGAGTT
ACGAAGGTGATAGCTAGGATAACATCAATAGATGTTATGTGTGTTGTTAC
AAATCTGAGAGAAAAATTTAGTGGTATAATTGGGCAACAAGATGTTAGAG
CAACTGACATTGACAAAGTGGATATGCACTTGTCATTTCGTCCTAGTGAC
ATTGTCAGAGTTGTAGTGCTGTCCCTTGGAGATGCACGGGCTTATTATCT
ATCAACTGCTAAGAATGAACTGGGTGTCATCTCTGGTAAGAGCTCAGCAG
ATGCAGCAACAATGGTTCCAATAAGTTGGGCAGAAATGCAGTGCCCATTG
ACTGGCCAACTTGAGCAAAGGAAGGTTGCAAAGGTTGAAAGTTAA
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protein sequence of Tc07v2_p012180.1

>Tc07v2_p012180.1 ID=Tc07v2_p012180.1|Name=Tc07v2_p012180.1|organism=Theobroma cacao|type=polypeptide|length=215bp
MKIPSVMTYAVSNLTMEHSINNLIEVEIVTPGAVLGRATNLKAGKRAYVT
YHNKTIYASVTSFRCIQSLPPDHQRLIAKVTGNKAHGPVSEPGSVVIARV
TKVIARITSIDVMCVVTNLREKFSGIIGQQDVRATDIDKVDMHLSFRPSD
IVRVVVLSLGDARAYYLSTAKNELGVISGKSSADAATMVPISWAEMQCPL
TGQLEQRKVAKVES*
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