Tc07v2_t011690.2

Overview
NameTc07v2_t011690.2
Unique NameTc07v2_t011690.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1110
Properties
Property NameValue
NotePeroxisomal (S)-2-hydroxy-acid oxidase GLO1
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 63 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productperoxisomal (S)-2-hydroxy-acid oxidase GLO1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594535
GenbankXM_007022120.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011690Tc07v2_g011690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011690.2Tc07v2_p011690.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto375528auto375528Theobroma cacaoexon
exon-auto375529auto375529Theobroma cacaoexon
exon-auto375530auto375530Theobroma cacaoexon
exon-auto375531auto375531Theobroma cacaoexon
exon-auto375532auto375532Theobroma cacaoexon
exon-auto375533auto375533Theobroma cacaoexon
exon-auto375534auto375534Theobroma cacaoexon
exon-auto375535auto375535Theobroma cacaoexon
exon-auto375536auto375536Theobroma cacaoexon
exon-auto375537auto375537Theobroma cacaoexon
exon-auto375538auto375538Theobroma cacaoexon
exon-auto375539auto375539Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto375540auto375540Theobroma cacaoCDS
CDS-auto375541auto375541Theobroma cacaoCDS
CDS-auto375542auto375542Theobroma cacaoCDS
CDS-auto375543auto375543Theobroma cacaoCDS
CDS-auto375544auto375544Theobroma cacaoCDS
CDS-auto375545auto375545Theobroma cacaoCDS
CDS-auto375546auto375546Theobroma cacaoCDS
CDS-auto375547auto375547Theobroma cacaoCDS
CDS-auto375548auto375548Theobroma cacaoCDS
CDS-auto375549auto375549Theobroma cacaoCDS
CDS-auto375550auto375550Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011690.2 ID=Tc07v2_t011690.2|Name=Tc07v2_t011690.2|organism=Theobroma cacao|type=mRNA|length=1110bp
ATGGAGATAACCAATGTCACAGAGTATGACGCAATTGCAAAGCAAAAGTT
GCCAAAGATGGTGTATGACTACTATGCATCTGGTGCAGAGGACCAGTGGA
CTTTGCAGGAGAACCGGAATGCATTCTCAAGGATCCTGTTTCGTCCTCGC
ATTCTTATTGATGTAAGCAAGATAGACATGACTACCACTGTTTTGGGTTT
CAAGATATCAATGCCCATCATGATTGCCCCAACAGCCATGCAGAAAATGG
CTCATCCTGAAGGGGAGTATGCAACAGCCAGGGCAGCATCAGCAGCTGGA
ACAATTATGACGTTATCCTCATGGGCCACTTCTAGTGTTGAGGAGGTTGC
TTCAACAGGACCTGGCATTAGGTTTTTCCAACTCTATGTATACAAGGACA
GGCATGTAGTTGCCCAGCTGGTGAGAAGAGCTGAAAGGGCTGGTTTCAAG
GCAATTGCTCTTACAGTTGATACTCCAAGGCTCGGTCGCAGAGAAGCTGA
CATCAAGAACAGATTTACTTTACCACCATTTTTGACATTGAAGAACTTTG
AAGGTTTGGACCTTGGGAAGATGGATAGAGCTGATGACTCAGGACTTGCT
TCATATGTTGCCGGACAAATTGATCGTACCCTTAGCTGGAAGGATGTGAA
ATGGCTTCAGACAATTACCAAATTGCCAATTCTTGTGAAGGGTGTGCTCA
CTGCTGAAGACACAAGGATAGCAATACAGTCTGGAGCAGCTGGTATCATT
GTCTCCAACCATGGTGCTCGCCAGCTTGATTATGTTCCTGCCACTATCAT
GGCCCTTGAAGAGGTTGTCAAAGCTGCACAAGGGCGGCTGCCTGTCTTCT
TGGATGGTGGTGTTAGGCGTGGAACTGATGTTTTCAAAGCTTTAGCACTG
GGAGCCTCTGGTATATTTATTGGACGACCTGTGGTGTTCTCATTGGCTGC
TGAAGGAGAAGCTGGTGTGAGGAAAGTACTTTCAATGCTGCGTGAGGAGT
TCGAACTAACCATGGCGCTGAGTGGTTGTTGTTCACTCAAAGAAATCACC
CGTGAGCACATTGTGACAGAATGGGACAGGCCTCACCCTCGTCCGCTTCC
CAGGTTATAG
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protein sequence of Tc07v2_p011690.2

>Tc07v2_p011690.2 ID=Tc07v2_p011690.2|Name=Tc07v2_p011690.2|organism=Theobroma cacao|type=polypeptide|length=370bp
MEITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPR
ILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG
TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFK
AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDRADDSGLA
SYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIAIQSGAAGII
VSNHGARQLDYVPATIMALEEVVKAAQGRLPVFLDGGVRRGTDVFKALAL
GASGIFIGRPVVFSLAAEGEAGVRKVLSMLREEFELTMALSGCCSLKEIT
REHIVTEWDRPHPRPLPRL*
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