Tc07v2_t011690.1

Overview
NameTc07v2_t011690.1
Unique NameTc07v2_t011690.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1110
Properties
Property NameValue
NotePeroxisomal (S)-2-hydroxy-acid oxidase GLO1
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 63 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productperoxisomal (S)-2-hydroxy-acid oxidase GLO1, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594535
GenbankXM_007022121.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011690Tc07v2_g011690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011690.1Tc07v2_p011690.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto375503auto375503Theobroma cacaoexon
exon-auto375504auto375504Theobroma cacaoexon
exon-auto375505auto375505Theobroma cacaoexon
exon-auto375506auto375506Theobroma cacaoexon
exon-auto375507auto375507Theobroma cacaoexon
exon-auto375508auto375508Theobroma cacaoexon
exon-auto375509auto375509Theobroma cacaoexon
exon-auto375510auto375510Theobroma cacaoexon
exon-auto375511auto375511Theobroma cacaoexon
exon-auto375512auto375512Theobroma cacaoexon
exon-auto375513auto375513Theobroma cacaoexon
exon-auto375514auto375514Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto375515auto375515Theobroma cacaoCDS
CDS-auto375516auto375516Theobroma cacaoCDS
CDS-auto375517auto375517Theobroma cacaoCDS
CDS-auto375518auto375518Theobroma cacaoCDS
CDS-auto375519auto375519Theobroma cacaoCDS
CDS-auto375520auto375520Theobroma cacaoCDS
CDS-auto375521auto375521Theobroma cacaoCDS
CDS-auto375522auto375522Theobroma cacaoCDS
CDS-auto375523auto375523Theobroma cacaoCDS
CDS-auto375524auto375524Theobroma cacaoCDS
CDS-auto375525auto375525Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011690.1 ID=Tc07v2_t011690.1|Name=Tc07v2_t011690.1|organism=Theobroma cacao|type=mRNA|length=1110bp
ATGGAGATAACCAATGTCACAGAGTATGACGCAATTGCAAAGCAAAAGTT
GCCAAAGATGGTGTATGACTACTATGCATCTGGTGCAGAGGACCAGTGGA
CTTTGCAGGAGAACCGGAATGCATTCTCAAGGATCCTGTTTCGTCCTCGC
ATTCTTATTGATGTAAGCAAGATAGACATGACTACCACTGTTTTGGGTTT
CAAGATATCAATGCCCATCATGATTGCCCCAACAGCCATGCAGAAAATGG
CTCATCCTGAAGGGGAGTATGCAACAGCCAGGGCAGCATCAGCAGCTGGA
ACAATTATGACGTTATCCTCATGGGCCACTTCTAGTGTTGAGGAGGTTGC
TTCAACAGGACCTGGCATTAGGTTTTTCCAACTCTATGTATACAAGGACA
GGCATGTAGTTGCCCAGCTGGTGAGAAGAGCTGAAAGGGCTGGTTTCAAG
GCAATTGCTCTTACAGTTGATACTCCAAGGCTCGGTCGCAGAGAAGCTGA
CATCAAGAACAGATTTACTTTACCACCATTTTTGACATTGAAGAACTTTG
AAGGTTTGGACCTTGGGAAGATGGATAGAGCTGATGACTCAGGACTTGCT
TCATATGTTGCCGGACAAATTGATCGTACCCTTAGCTGGAAGGATGTGAA
ATGGCTTCAGACAATTACCAAATTGCCAATTCTTGTGAAGGGTGTGCTCA
CTGCTGAAGACACAAGGATAGCAATACAGTCTGGAGCAGCTGGTATCATT
GTCTCCAACCATGGTGCTCGCCAGCTTGATTATGTTCCTGCCACTATCAT
GGCCCTTGAAGAGGTTGTCAAAGCTGCACAAGGGCGGCTGCCTGTCTTCT
TGGATGGTGGTGTTAGGCGTGGAACTGATGTTTTCAAAGCTTTAGCACTG
GGAGCCTCTGGTATATTTATTGGACGACCTGTGGTGTTCTCATTGGCTGC
TGAAGGAGAAGCTGGTGTGAGGAAAGTACTTTCAATGCTGCGTGAGGAGT
TCGAACTAACCATGGCGCTGAGTGGTTGTTGTTCACTCAAAGAAATCACC
CGTGAGCACATTGTGACAGAATGGGACAGGCCTCACCCTCGTCCGCTTCC
CAGGTTATAG
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protein sequence of Tc07v2_p011690.1

>Tc07v2_p011690.1 ID=Tc07v2_p011690.1|Name=Tc07v2_p011690.1|organism=Theobroma cacao|type=polypeptide|length=370bp
MEITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPR
ILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG
TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFK
AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDRADDSGLA
SYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIAIQSGAAGII
VSNHGARQLDYVPATIMALEEVVKAAQGRLPVFLDGGVRRGTDVFKALAL
GASGIFIGRPVVFSLAAEGEAGVRKVLSMLREEFELTMALSGCCSLKEIT
REHIVTEWDRPHPRPLPRL*
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