Tc07v2_t011100.2

Overview
NameTc07v2_t011100.2
Unique NameTc07v2_t011100.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length486
Properties
Property NameValue
NotePutative Thylakoidal processing peptidase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productmitochondrial inner membrane protease subunit 1, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594464
GenbankXM_018124922.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011100Tc07v2_g011100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011100.2Tc07v2_p011100.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto374255auto374255Theobroma cacaoexon
exon-auto374256auto374256Theobroma cacaoexon
exon-auto374257auto374257Theobroma cacaoexon
exon-auto374258auto374258Theobroma cacaoexon
exon-auto374259auto374259Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto374260auto374260Theobroma cacaoCDS
CDS-auto374261auto374261Theobroma cacaoCDS
CDS-auto374262auto374262Theobroma cacaoCDS
CDS-auto374263auto374263Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011100.2 ID=Tc07v2_t011100.2|Name=Tc07v2_t011100.2|organism=Theobroma cacao|type=mRNA|length=486bp
ATGAGACAATGGAGAAGCCTAGCAAAAGAAGCCATGGATCGAGCCTTTAT
CGTCGTCAAATTCCTCTGCTTCCTTCACGTCACCGACTCCTACCTCCTCT
CCCCTACCCATGTGCTGGGTCCTAGCATGCTGCCAACGTTAAACCTAACC
GGCGACGTCGTACTAGCCGAACACTTGTCTCACCGGGTGGGCAAATTGGG
TCCAGGTGACGTGGTCCTGGTTCGGTCGCCGTTCGACCCTAAAAAGACCT
TGACTAAGCGCATTGTAGCCATGGAAGGTGATAAAGTTGCCTTCTCATTG
GACCCCACTCGAAGCCATAGCTCTCGGTCTCTCGTGGTTCCAAAGGGACA
TGTTTGGATTCAAGGGGATAACTTGTATGCTTCTAATGATTCACGACATT
TTGGGCCTGTTCCTTACGGTCTTATTAAAGGGAAAGTGTTGCTGAGGGTA
TGGCCACCAAACAGCATTGGATCATTGGGTCAATGA
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protein sequence of Tc07v2_p011100.2

>Tc07v2_p011100.2 ID=Tc07v2_p011100.2|Name=Tc07v2_p011100.2|organism=Theobroma cacao|type=polypeptide|length=162bp
MRQWRSLAKEAMDRAFIVVKFLCFLHVTDSYLLSPTHVLGPSMLPTLNLT
GDVVLAEHLSHRVGKLGPGDVVLVRSPFDPKKTLTKRIVAMEGDKVAFSL
DPTRSHSSRSLVVPKGHVWIQGDNLYASNDSRHFGPVPYGLIKGKVLLRV
WPPNSIGSLGQ*
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