Tc07v2_t011100.1

Overview
NameTc07v2_t011100.1
Unique NameTc07v2_t011100.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length486
Properties
Property NameValue
NotePutative Thylakoidal processing peptidase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productmitochondrial inner membrane protease subunit 1, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594464
GenbankXM_007022031.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011100Tc07v2_g011100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011100.1Tc07v2_p011100.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto374245auto374245Theobroma cacaoexon
exon-auto374246auto374246Theobroma cacaoexon
exon-auto374247auto374247Theobroma cacaoexon
exon-auto374248auto374248Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto374249auto374249Theobroma cacaoCDS
CDS-auto374250auto374250Theobroma cacaoCDS
CDS-auto374251auto374251Theobroma cacaoCDS
CDS-auto374252auto374252Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011100.1 ID=Tc07v2_t011100.1|Name=Tc07v2_t011100.1|organism=Theobroma cacao|type=mRNA|length=486bp
ATGAGACAATGGAGAAGCCTAGCAAAAGAAGCCATGGATCGAGCCTTTAT
CGTCGTCAAATTCCTCTGCTTCCTTCACGTCACCGACTCCTACCTCCTCT
CCCCTACCCATGTGCTGGGTCCTAGCATGCTGCCAACGTTAAACCTAACC
GGCGACGTCGTACTAGCCGAACACTTGTCTCACCGGGTGGGCAAATTGGG
TCCAGGTGACGTGGTCCTGGTTCGGTCGCCGTTCGACCCTAAAAAGACCT
TGACTAAGCGCATTGTAGCCATGGAAGGTGATAAAGTTGCCTTCTCATTG
GACCCCACTCGAAGCCATAGCTCTCGGTCTCTCGTGGTTCCAAAGGGACA
TGTTTGGATTCAAGGGGATAACTTGTATGCTTCTAATGATTCACGACATT
TTGGGCCTGTTCCTTACGGTCTTATTAAAGGGAAAGTGTTGCTGAGGGTA
TGGCCACCAAACAGCATTGGATCATTGGGTCAATGA
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protein sequence of Tc07v2_p011100.1

>Tc07v2_p011100.1 ID=Tc07v2_p011100.1|Name=Tc07v2_p011100.1|organism=Theobroma cacao|type=polypeptide|length=162bp
MRQWRSLAKEAMDRAFIVVKFLCFLHVTDSYLLSPTHVLGPSMLPTLNLT
GDVVLAEHLSHRVGKLGPGDVVLVRSPFDPKKTLTKRIVAMEGDKVAFSL
DPTRSHSSRSLVVPKGHVWIQGDNLYASNDSRHFGPVPYGLIKGKVLLRV
WPPNSIGSLGQ*
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