Tc07v2_t011090.1

Overview
NameTc07v2_t011090.1
Unique NameTc07v2_t011090.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1266
Properties
Property NameValue
NoteSolanesyl diphosphate synthase 2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsolanesyl diphosphate synthase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594463
GenbankXM_007022029.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011090Tc07v2_g011090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011090.1Tc07v2_p011090.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto374230auto374230Theobroma cacaoexon
exon-auto374231auto374231Theobroma cacaoexon
exon-auto374232auto374232Theobroma cacaoexon
exon-auto374233auto374233Theobroma cacaoexon
exon-auto374234auto374234Theobroma cacaoexon
exon-auto374235auto374235Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto374236auto374236Theobroma cacaoCDS
CDS-auto374237auto374237Theobroma cacaoCDS
CDS-auto374238auto374238Theobroma cacaoCDS
CDS-auto374239auto374239Theobroma cacaoCDS
CDS-auto374240auto374240Theobroma cacaoCDS
CDS-auto374241auto374241Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011090.1 ID=Tc07v2_t011090.1|Name=Tc07v2_t011090.1|organism=Theobroma cacao|type=mRNA|length=1266bp
ATGATGTCAGTGACATGCCATAATCTTGATTTTGCAACAAGAGTGCTTGA
TTTGGTTACTTGTGGCACTTCTTCTAATGCTTCAATTGAAAGGCACTCAG
TGAAGAACTACGGAAAAACAATCTCAAACGCTAGTTGTAAAGGCTGTGGA
GGTAGACGAATGGTGTACTGTAGGCAAAACACTACTGGAAGTCGGGTGTT
CCCCACAAAAGCTCCAGAGCCTCTGCTTGATGGAGTTGGTCGAAGTACTG
CACCAGTGCTGGATTTGAAGAAAGAGCTCAGAAGCCCAATTTCACTGGCA
AACTTGTTTAAAGTGGTTGCTGATGACCTCCAGATTCTAAATCAAAATCT
CCAGTCAATTGTTGGTGCAGAGAACCCTGTTCTGATGTCTGCAGCTGAGC
AGATCTTTGGTGCTGGGGGCAAGAGGATGAGACCGGCCTTGGTGTTCCTA
GTTTCAAGAGCTACAGCAGAGTTAGTTGGATTGAAGGAACTTACCACAAA
GCATCGGCGTTTGGCTGAGATCATTGAGATGATCCATACTGCAAGCTTGA
TACATGATGATGTATTAGATGAAAGTGACATGCGAAGAGGGAAAGAAACT
GTTCACCAACTGTATGGCACAAGAGTAGCAATACTGGCTGGGGACTTCAT
GTTTGCCCAGTCATCATGGTACCTTGCAAATCTTGAAAACCTTGAAGTCA
TTAAACTCATCAGCCAGGTTATTAAGGATTTTGCAAGTGGTGAGATTAAG
CAGGCATCCAGTTTGTTTGACTGTGACCTTGAACTTGAGGAGTACTTGCT
AAAGAGTTACTACAAAACAGCTTCTTTGATTGCGGCTAGTACCAAAGGAG
CTGCTATTTTTAGTGGGGCTGATCGTAGTGTCACTGAGCAAATGTATGAA
TTCGGGAAGAATCTTGGTCTATCATTCCAAGTTGTTGATGACATATTGGA
TTTCACACAATCGGCAGAGCAGCTGGGGAAGCCAGCTGGTAGTGATCTAG
CGAAAGGCAACCTGACAGCACCAGTGATTTTTGCTCTAGAAAAAGAGCCA
AAACTTAGAGAAATCATTGAATCGGAGTTCTGTGAGACCGGTTCTCTTGA
TGAAGCAATTGAATTGGTCAAGAAATGTGGAGGAATTGAAAGAGCGCAAG
TGTTAGCAAAAGAGAGAGCTGATCTTGCAATTAAGAATCTACAGTGTCTT
CCTCAGAGCGCTTTTCGGTTAGCTCTTGAAGACATGGTGATGTTTAATCT
CGAAAGGATTGACTAG
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protein sequence of Tc07v2_p011090.1

>Tc07v2_p011090.1 ID=Tc07v2_p011090.1|Name=Tc07v2_p011090.1|organism=Theobroma cacao|type=polypeptide|length=422bp
MMSVTCHNLDFATRVLDLVTCGTSSNASIERHSVKNYGKTISNASCKGCG
GRRMVYCRQNTTGSRVFPTKAPEPLLDGVGRSTAPVLDLKKELRSPISLA
NLFKVVADDLQILNQNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFL
VSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGKET
VHQLYGTRVAILAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIK
QASSLFDCDLELEEYLLKSYYKTASLIAASTKGAAIFSGADRSVTEQMYE
FGKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEP
KLREIIESEFCETGSLDEAIELVKKCGGIERAQVLAKERADLAIKNLQCL
PQSAFRLALEDMVMFNLERID*
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