Tc07v2_t010340.2

Overview
NameTc07v2_t010340.2
Unique NameTc07v2_t010340.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length567
Properties
Property NameValue
NoteUncharacterized protein
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ProductNAC domain-containing protein 72, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594354
GenbankXM_018124912.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g010340Tc07v2_g010340Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p010340.2Tc07v2_p010340.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto371980auto371980Theobroma cacaoexon
exon-auto371981auto371981Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto371982auto371982Theobroma cacaoCDS
CDS-auto371983auto371983Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t010340.2 ID=Tc07v2_t010340.2|Name=Tc07v2_t010340.2|organism=Theobroma cacao|type=mRNA|length=567bp
ATGGCAACCAATGGTCTTAGTACCTCTGCTCCTCTAGTTTTTATTAGAAA
AAATTATGTGTTCTGGTCGATGAAGATCCAATCTTACCTCAGGGCGTTCA
ATCTCTGGGAGGTGGTAAAGACCGAGACTAAACCAGTGCAAAGGCATGCC
GATCCAACCTTGGCTCAGATAAGGCAGTTTGAAGAAGACAAGGCAAAGAG
TATGAATTTTAAAATCACTGGCAAGTCCAGGCTGCATCTTGATCAACAAG
TAATCAAGGATTTTGACTTGTACGGAGAGAAAGAACCTTGGGAAATATGG
GAGTTGTACGGTGGGGATAATCTTCGGTCTGGAGAAGATGTCTACTTCTT
CACTCGGTTAAAGAAGAAAACTCAAAACAGTTCAAAGATGAACCGCTTGA
TTGGAACCGGTACTTGGATGATAACTGGGCCGGTCGAGGCAATAACATAT
TCCCAATTATCAGCACAGCCTTTGGGGTTCAAGAAACGGTTGATCAAGTT
TGTCGTCAATAGCAAAGGATTGTCATCAATCCTTGATTACAATTTTTTTC
CTTCAACAGCTTGTTGA
back to top

protein sequence of Tc07v2_p010340.2

>Tc07v2_p010340.2 ID=Tc07v2_p010340.2|Name=Tc07v2_p010340.2|organism=Theobroma cacao|type=polypeptide|length=189bp
MATNGLSTSAPLVFIRKNYVFWSMKIQSYLRAFNLWEVVKTETKPVQRHA
DPTLAQIRQFEEDKAKSMNFKITGKSRLHLDQQVIKDFDLYGEKEPWEIW
ELYGGDNLRSGEDVYFFTRLKKKTQNSSKMNRLIGTGTWMITGPVEAITY
SQLSAQPLGFKKRLIKFVVNSKGLSSILDYNFFPSTAC*
back to top