Tc07v2_t008870.1

Overview
NameTc07v2_t008870.1
Unique NameTc07v2_t008870.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2919
Properties
Property NameValue
NotePhosphoenolpyruvate carboxylase, housekeeping isozyme
Model evidenceSupporting evidence includes similarity to: 35 ESTs, 46 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productphosphoenolpyruvate carboxylase, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594176
GenbankXM_007021667.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g008870Tc07v2_g008870Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p008870.1Tc07v2_p008870.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto370011auto370011Theobroma cacaoexon
exon-auto370012auto370012Theobroma cacaoexon
exon-auto370013auto370013Theobroma cacaoexon
exon-auto370014auto370014Theobroma cacaoexon
exon-auto370015auto370015Theobroma cacaoexon
exon-auto370016auto370016Theobroma cacaoexon
exon-auto370017auto370017Theobroma cacaoexon
exon-auto370018auto370018Theobroma cacaoexon
exon-auto370019auto370019Theobroma cacaoexon
exon-auto370020auto370020Theobroma cacaoexon
exon-auto370021auto370021Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto370022auto370022Theobroma cacaoCDS
CDS-auto370023auto370023Theobroma cacaoCDS
CDS-auto370024auto370024Theobroma cacaoCDS
CDS-auto370025auto370025Theobroma cacaoCDS
CDS-auto370026auto370026Theobroma cacaoCDS
CDS-auto370027auto370027Theobroma cacaoCDS
CDS-auto370028auto370028Theobroma cacaoCDS
CDS-auto370029auto370029Theobroma cacaoCDS
CDS-auto370030auto370030Theobroma cacaoCDS
CDS-auto370031auto370031Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t008870.1 ID=Tc07v2_t008870.1|Name=Tc07v2_t008870.1|organism=Theobroma cacao|type=mRNA|length=2919bp
ATGGCGGCTAATAATAATAATAATAATAATAGCAAGTTAGAGAAGTTGGC
ATCGATTGATGCACAGCTACGGCTTTTGGTTCCTTCTAAAGTGAGTGAAG
ATGATAAATTGGTGGAGTATGATGCTTTGCTTTTGGATCGGTTTCTTGAT
ATTCTTCAAGACTTGCATGGCGAGGATCTTAAGGAAACGGTTCAAGAATG
TTATGAACTTTCTGCCGAGTATGAAGGGAAGAATAACCCCAAGAAACTTG
AGGAGCTGGGAAATGTGTTGACGAGTTTGGATCCGGGGGACTCCATTGTT
GTAGCTAAAGCTTTCTCCCACATGCTTAACTTGGCTAACCTAGCTGAGGA
AGTTCAGATTGCTTACCGCCGAAGGATCAAGTTGAAGAAAGGTGATTTTA
TTGATGAAAACTCTGCAACAACTGAATCAGACATTGAAGAAACTCTCAAG
AGACTTGTGTTTGATCTGAAGAAGTCTCCCGAGGAAGTTTTTGATGCTCT
TAAGAACCAGACTGTGGATCTAGTATTCACTGCTCATCCTACCCAATCAG
TTCGTAGATCTTTACTGCAGAAGCATGGAAGGATAAGGAACTGTTTAGCG
CAGTTGTATGCTAAAGATATTACTCCAGATGATAAGCAGGAGCTTGATGA
GGCTTTACAGCGTGAGATTCAAGCTGCATTTCGTACAGATGAGATTCGAA
GGACCCCTCCAACTCCCCAAGATGAGATGAGGGCAGGAATGAGCTACTTC
CATGAAACAGTATGGAAAGGTGTCCCAAAATTCTTGCGCCGAGTTGACAC
AGCTTTGAAGAACATTGGAATTAATGAACGTGTTCCCTACAATGCGCCAC
TTATTCAATTTTCTTCATGGATGGGTGGTGATCGTGATGGCAATCCAAGG
GTAACTCCTGAGGTTACAAGGGATGTTTGCTTGTTGGCTAGAATGATGGC
TGCCAATTTGTACTATTCCCAAATTGAGGATCTGATGTTTGAGTTGTCCA
TGTGGCGTTGCAGCGATGAGCTTCGTGTTCGTGCAGATGAACTTCATAGA
TCCTCAAGGAGAGATGCTAAACACTACATAGAGTTTTGGAAACAAATTCC
TCCCAATGAACCCTACCGTGTTATTCTTGGTGATGTGAGGGATAAGCTGT
ATCAGACACGTGAAAGGTCTCGTCAAATGTTATCCCATGGTATCTCTGAC
ATTCCAGAGGAAGCAACTTTCACCAACATTGAGCAGTTTTTGGAACCTCT
TGAACTTTGCTATAGATCACTTTGCTCTTGCGGTGACCGGCCAATTGCTG
ATGGAAGCCTTCTTGATTTCTTGAGACAAGTATCAACCTTTGGACTCTCA
CTTGTCAGACTTGACATTAGGCAAGAGTCTGACCGCCACACTGATGTCAT
AGATGCCATTACCAAGCACTTGGAACTGGGTTCCTATCGTGAGTGGTCTG
AAGAACGTAAGCAGGAATGGCTATTATCTGAACTGAGTGGGAAGCGCCCA
TTATTTGGTCCTGATCTTCCTAAAACAGAAGAAATTGCTGATGTTTTGGA
CACATTCCATGTCATAGCAGAGCTCCCAGCAGACAACTTTGGAGCATACA
TCATTTCAATGGCAACTGCACCTTCTGATGTTCTAGCTGTTGAGCTCCTG
CAGCGTGAATGCCACGTAAAGGAACCATTAAGAGTTGTACCACTCTTTGA
GAAGCTTGCAGATCTGGAGGCTGCACCTGCTGCTTTGGCTCGGCTCTTCT
CAATAGATTGGTACAGAAATCGGATCAATGGCAAGCAAGAAGTTATGATT
GGGTATTCAGATTCAGGTAAAGATGCTGGGCGTCTCTCTGCAGCCTGGCA
GTTATACAAAGCTCAGGAGGAGCTTATAAAGGTTGCTAAGCAATTTGGTG
TGAAGCTAACAATGTTCCATGGTCGTGGTGGAACTGTTGGAAGAGGAGGT
GGTCCCACCCATCTTGCTATATTGTCTCAACCACCAGAGACTATTCATGG
GTCACTTCGTGTAACAGTTCAAGGTGAAGTTATAGAGCAATCATTTGGTG
AGGAGCACTTGTGCTTTAGAACACTCCAGCGTTTTACAGCTGCCACACTT
GAGCATGGTATGCATCCACCAGTTTCACCAAAACCAGAATGGCGTGCACT
GATGGATGAAATGGCCGTTATTGCTACAGAGAAGTACCGTTCCATTGTCT
TCCAAGAGCCCAGATTTGTTGAATATTTCCGCCTTGCTACACCAGAGTTG
GAGTATGGTAGGATGAACATTGGAAGTCGACCATCAAAGCGGAAGCCAAG
TGGGGGTATTGAATCTCTCCGTGCAATTCCCTGGATCTTTGCCTGGACAC
AGACAAGATTTCATCTTCCTGTTTGGCTTGGTTTTGGAGCAGCATTTAAA
CATGCCATTAAGAAGGACATCAAGAATCTCCATATGCTCCAGGAGATGTA
CAATAATTGGCCTTTCTTCAGGGTCACAATTGATTTAGTTGAAATGGTCT
TTGCAAAAGGAGATCCTGGAATAGCAGCCTTGTATGATAAGCTCCTTGTT
TCTCCTGAATTGTGGTCATTCGGCAAGCGGTTGAGGACCAACTATGAAGA
AACAAAGAGCCTTCTCCTCCAGATTGCTGGCCACAGGGATCTTCTTGAAG
GGGACCCATACTTGAAGCAAAGGCTCCGGCTGCGTGATTCATACATCACA
ACACTCAATGTTTGCCAGGCCTACACACTCAAACGGATCCGTGATCCAAA
TTACAATGTGAAGTTGCGGCCACATATCTCCAGAGAGATTATGGAATCAA
GCAAACCAGCTGATGAACTTGTGAAATTGAACCCTACTAGTGAGTACGCC
CCTGGTTTGGAGGATACCCTCATCTTGACTATGAAGGGTATTGCTGCAGG
CATGCAAAACACTGGTTAA
back to top

protein sequence of Tc07v2_p008870.1

>Tc07v2_p008870.1 ID=Tc07v2_p008870.1|Name=Tc07v2_p008870.1|organism=Theobroma cacao|type=polypeptide|length=973bp
MAANNNNNNNSKLEKLASIDAQLRLLVPSKVSEDDKLVEYDALLLDRFLD
ILQDLHGEDLKETVQECYELSAEYEGKNNPKKLEELGNVLTSLDPGDSIV
VAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFIDENSATTESDIEETLK
RLVFDLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLA
QLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYF
HETVWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPR
VTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCSDELRVRADELHR
SSRRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERSRQMLSHGISD
IPEEATFTNIEQFLEPLELCYRSLCSCGDRPIADGSLLDFLRQVSTFGLS
LVRLDIRQESDRHTDVIDAITKHLELGSYREWSEERKQEWLLSELSGKRP
LFGPDLPKTEEIADVLDTFHVIAELPADNFGAYIISMATAPSDVLAVELL
QRECHVKEPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRINGKQEVMI
GYSDSGKDAGRLSAAWQLYKAQEELIKVAKQFGVKLTMFHGRGGTVGRGG
GPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATL
EHGMHPPVSPKPEWRALMDEMAVIATEKYRSIVFQEPRFVEYFRLATPEL
EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFK
HAIKKDIKNLHMLQEMYNNWPFFRVTIDLVEMVFAKGDPGIAALYDKLLV
SPELWSFGKRLRTNYEETKSLLLQIAGHRDLLEGDPYLKQRLRLRDSYIT
TLNVCQAYTLKRIRDPNYNVKLRPHISREIMESSKPADELVKLNPTSEYA
PGLEDTLILTMKGIAAGMQNTG*
back to top