Tc07v2_t008370.1

Overview
NameTc07v2_t008370.1
Unique NameTc07v2_t008370.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1404
Properties
Property NameValue
NoteHomogentisate 1,2-dioxygenase
Model evidenceSupporting evidence includes similarity to: 1 EST, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producthomogentisate 1,2-dioxygenase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594112
GenbankXM_007021573.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g008370Tc07v2_g008370Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p008370.1Tc07v2_p008370.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto369105auto369105Theobroma cacaoexon
exon-auto369106auto369106Theobroma cacaoexon
exon-auto369107auto369107Theobroma cacaoexon
exon-auto369108auto369108Theobroma cacaoexon
exon-auto369109auto369109Theobroma cacaoexon
exon-auto369110auto369110Theobroma cacaoexon
exon-auto369111auto369111Theobroma cacaoexon
exon-auto369112auto369112Theobroma cacaoexon
exon-auto369113auto369113Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto369114auto369114Theobroma cacaoCDS
CDS-auto369115auto369115Theobroma cacaoCDS
CDS-auto369116auto369116Theobroma cacaoCDS
CDS-auto369117auto369117Theobroma cacaoCDS
CDS-auto369118auto369118Theobroma cacaoCDS
CDS-auto369119auto369119Theobroma cacaoCDS
CDS-auto369120auto369120Theobroma cacaoCDS
CDS-auto369121auto369121Theobroma cacaoCDS
CDS-auto369122auto369122Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t008370.1 ID=Tc07v2_t008370.1|Name=Tc07v2_t008370.1|organism=Theobroma cacao|type=mRNA|length=1404bp
ATGGAGAAGCCAGCGGCGGAGACCACAAAAGGCAACGGTTTGGGGGTTTT
TCCCGAAGATTTGGAGTACCAATCGGGATTCGGCAATCATTTCTCGTCGG
AGGCGATCGCTGGAGCTTTGCCACGTGGCCAAAACAGTCCTCTTATTTGC
CCTTTTGGACTCTACGCTGAGCAGATTTCTGGCACTTCCTTCACTTCTCC
TCGTAAGCTTAATCAGCGCAGTTGGTTATATCGAATCAAACCATCGGTTA
CTCACGAGCCGTTTTGGCCTCGTGACTCAAGTCATAAGAAGCTTGTGAGT
GAATTCGACGGGTCCAACACGGTTGCAAACCCTACTCAGCTCCGGTGGAA
GCCTGTGGATATTCCCGATACGCCGACGGATTTTATTGATGGTTTGTTCA
CGATATGTGGAGCTGGCAGCTCATTCCTTCGACATGGATATGCTATTCAC
ATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTCTGCAATGCAGA
TGGTGACTTTTTGGTAGTTCCCCAGCAAGGAAGGCTATGGATCACTACTG
AATGTGGAAGATTGCAGGTCTCTCCTGGTGAAATTGCTGTTTTGCCTCAA
GGCTTTCGCTTTGTTGTAGATTTGCCTGATGGCCCATCGCGTGGTTATGT
TGCTGAGGTTTTCGGTACCCATTTTCAACTTCCTGATCTTGGTCCGATAG
GTGCTAACGGTCTTGCTGCTTCAAGGGACTTCCTTGCTCCCACAGCCTGG
TTTGAGGAGCACCCCCGCCCAGGGTTTACTATTGTACAAAAGTTTGGAGG
AGAACTTTTCAATGCAAGACAAGATTTTTCTCCTTTCAATGTAGTTGCCT
GGCATGGTAATTATGTCCCATATAAGTATGATCTTAGCAAGTTCTGCCCT
TACAATACTGTTTTAGTTGACCATGGCGATCCTTCAATAAATACTGTTCT
GACAGCACCAACTGATAAACCGGGTGTGGCATTGCTTGATTTTGTCATTT
TCCCTTCGAGATGGTTGGTTGCTGAACACACATTCCGACCTCCATATTAC
CATCGTAATTGCATGAGTGAATTTATGGGCCTAATATATGGTGGATATGA
GGCAAAAGCTGATGGATTTCTGCCTGGTGGTGCTAGTCTTCACAGCTGCA
TGACTCCACATGGTCCTGATACCAAGACATATGAGGCTACAATTGCACGA
GGAAATGAGGCAGGACCTCACAAGATCACTGATACCATGGCCTTTATGTT
TGAATCATTTTTAATGCCTAGAACCTGTCCATGGGTTCTTGAGTCCCCCT
TCAGGGATCATGATTATTACCAGTGTTGGGTAGGACTGAAATCCCACTTT
TCTTGCGAAAAAGCAAATGGTAAAAGCAATGACTTGGCGGAATGGACTCC
ATGA
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protein sequence of Tc07v2_p008370.1

>Tc07v2_p008370.1 ID=Tc07v2_p008370.1|Name=Tc07v2_p008370.1|organism=Theobroma cacao|type=polypeptide|length=468bp
MEKPAAETTKGNGLGVFPEDLEYQSGFGNHFSSEAIAGALPRGQNSPLIC
PFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSVTHEPFWPRDSSHKKLVS
EFDGSNTVANPTQLRWKPVDIPDTPTDFIDGLFTICGAGSSFLRHGYAIH
MYTANKSMDNCAFCNADGDFLVVPQQGRLWITTECGRLQVSPGEIAVLPQ
GFRFVVDLPDGPSRGYVAEVFGTHFQLPDLGPIGANGLAASRDFLAPTAW
FEEHPRPGFTIVQKFGGELFNARQDFSPFNVVAWHGNYVPYKYDLSKFCP
YNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPSRWLVAEHTFRPPYY
HRNCMSEFMGLIYGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIAR
GNEAGPHKITDTMAFMFESFLMPRTCPWVLESPFRDHDYYQCWVGLKSHF
SCEKANGKSNDLAEWTP*
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