Tc07v2_t007450.1

Overview
NameTc07v2_t007450.1
Unique NameTc07v2_t007450.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1584
Properties
Property NameValue
NoteProbable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
Model evidenceSupporting evidence includes similarity to: 13 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594005
GenbankXM_007021446.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g007450Tc07v2_g007450Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p007450.1Tc07v2_p007450.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto367643auto367643Theobroma cacaoexon
exon-auto367644auto367644Theobroma cacaoexon
exon-auto367645auto367645Theobroma cacaoexon
exon-auto367646auto367646Theobroma cacaoexon
exon-auto367647auto367647Theobroma cacaoexon
exon-auto367648auto367648Theobroma cacaoexon
exon-auto367649auto367649Theobroma cacaoexon
exon-auto367650auto367650Theobroma cacaoexon
exon-auto367651auto367651Theobroma cacaoexon
exon-auto367652auto367652Theobroma cacaoexon
exon-auto367653auto367653Theobroma cacaoexon
exon-auto367654auto367654Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto367655auto367655Theobroma cacaoCDS
CDS-auto367656auto367656Theobroma cacaoCDS
CDS-auto367657auto367657Theobroma cacaoCDS
CDS-auto367658auto367658Theobroma cacaoCDS
CDS-auto367659auto367659Theobroma cacaoCDS
CDS-auto367660auto367660Theobroma cacaoCDS
CDS-auto367661auto367661Theobroma cacaoCDS
CDS-auto367662auto367662Theobroma cacaoCDS
CDS-auto367663auto367663Theobroma cacaoCDS
CDS-auto367664auto367664Theobroma cacaoCDS
CDS-auto367665auto367665Theobroma cacaoCDS
CDS-auto367666auto367666Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t007450.1 ID=Tc07v2_t007450.1|Name=Tc07v2_t007450.1|organism=Theobroma cacao|type=mRNA|length=1584bp
ATGGCTGTAGCAACAACAGTGGCAGTAAACGGGGGCTTGAAGATGGGGAG
CGTATCACAAGCTTATTTAGAAAGCAAAGCAGTGAAGGAGACAAGGTCTT
TGATATCTGAGCTTTGCCGCCAGTTCTATAACCTTGGATGGGTCTCAGGG
ACGGGTGGCAGCATCACCATGAAGGTCCATGATAGCTGTATCCCTAAGCC
TCAGCAGCTCATCCTCATGTCCCCTTCTGGTGTTCAAAAGGAGAGAATGG
AACCAGAGGACATGTATATATTATCGGGTGATGGCTCTATCATAACTTCA
CCTTCTCCAAAGCCATACCCTCATAAGCCTCCCAAGTGTTCTGATTGTGC
TCCTCTTTTTATGAAGGCATATCACATCCGTAATGCCGGAGCTGTTATCC
ATAGTCATGGGATGGAATCTTGTCTGGTAACGATGATCAATCCACTTTCA
AAAGAGTTTCGTATCACTCATATGGAGATGATAAAGGGAATTCAAGGGCA
TGGTTACTATGATGAACTTGTAATCCCAATCATCGAGAACACAGCCTATG
AAAATGAGCTCACGGATTCTCTTGCCAAAGCTATAGAAGCCTATCCTAAA
ACAACTGCTGTGCTTGTTCGCAATCATGGCATATATGTATGGGGAGACTC
ATGGATCAGTGCTAAAACTCAGGCTGAATCTTACCATTACCTCTTTGATG
CTGCTATTAAACTTCATCAACTAGGCTTAGACTGGTCTACTCCGGATCAT
GGCCCTATTCAGAATGTTAAAGGAGTTTCAGGCATCAATGGCAGGATAAA
TGTGTCTACGAAGGCTGGGACTGTGGATTCAAATTACAAACTTGGGTCAT
TTCCACATTGCATTGTGCTTGACATTGAAGGAACGACAACTCCTATTTCA
TTTGTAACAGATGTTCTCTTTCCCTATGCCCGAAACAATGTTGGGAGGCA
TTTGTCTGCAACATATGCTACTGCCGAAACCCAAGATGATATAAATTTGT
TACGTTCTCAAGTTGTAGATGACTTGAAGCAAGGTGTTCTTGGCGCTGTG
CCTATCCCTTTGGAGGATGTGGGAAAAGAGGAGGTGATTGCAGCTTTGGT
TGCTAATGTGGAAGCAATGATAAAAGCTGATCGAAAAATCACCGCCTTAA
AGCAATTGCAAGGTCATATATGGCGAACTGGATTTGAGAACAATGAGCTG
GAAGGTGTAGTTTTTGATGATGTACCAGAAGCTCTTCAAAAGTGGCACAG
TTTGGGCGTAAAGGTATATATATATTCTAGTGGTAGCAGGTTGGCTCAAA
GGCTTATATTTGGAAACTCCAACTTTGGCGATTTGAGGAAGTATTTATCT
GGATTTTTTGACACCGCAGTGGGAAACAAAAGAGAAACACGCAGTTATGT
TGAAATATTTGAGTCATTGGGAGTTGATGAGCCATCTGAGATACTATTTG
TGACTGATGTCTATCAAGAAGCTACCGCTGCAAAAGCTGCAGGTTTGGAG
GTGGTAATCTCTGTCCGGCCAGGAAATGGTCCTCTTCCCGATAACCATGG
ATTCAAGACTATCAACTCTTTCTTGGAGATCTGA
back to top

protein sequence of Tc07v2_p007450.1

>Tc07v2_p007450.1 ID=Tc07v2_p007450.1|Name=Tc07v2_p007450.1|organism=Theobroma cacao|type=polypeptide|length=528bp
MAVATTVAVNGGLKMGSVSQAYLESKAVKETRSLISELCRQFYNLGWVSG
TGGSITMKVHDSCIPKPQQLILMSPSGVQKERMEPEDMYILSGDGSIITS
PSPKPYPHKPPKCSDCAPLFMKAYHIRNAGAVIHSHGMESCLVTMINPLS
KEFRITHMEMIKGIQGHGYYDELVIPIIENTAYENELTDSLAKAIEAYPK
TTAVLVRNHGIYVWGDSWISAKTQAESYHYLFDAAIKLHQLGLDWSTPDH
GPIQNVKGVSGINGRINVSTKAGTVDSNYKLGSFPHCIVLDIEGTTTPIS
FVTDVLFPYARNNVGRHLSATYATAETQDDINLLRSQVVDDLKQGVLGAV
PIPLEDVGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFENNEL
EGVVFDDVPEALQKWHSLGVKVYIYSSGSRLAQRLIFGNSNFGDLRKYLS
GFFDTAVGNKRETRSYVEIFESLGVDEPSEILFVTDVYQEATAAKAAGLE
VVISVRPGNGPLPDNHGFKTINSFLEI*
back to top