Tc07v2_t007090.1

Overview
NameTc07v2_t007090.1
Unique NameTc07v2_t007090.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1578
Properties
Property NameValue
NoteNucleotidyltransferase family protein isoform 4
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productnon-canonical poly(A) RNA polymerase PAPD5, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593968
GenbankXM_007021399.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g007090Tc07v2_g007090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p007090.1Tc07v2_p007090.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto367136auto367136Theobroma cacaoexon
exon-auto367137auto367137Theobroma cacaoexon
exon-auto367138auto367138Theobroma cacaoexon
exon-auto367139auto367139Theobroma cacaoexon
exon-auto367140auto367140Theobroma cacaoexon
exon-auto367141auto367141Theobroma cacaoexon
exon-auto367142auto367142Theobroma cacaoexon
exon-auto367143auto367143Theobroma cacaoexon
exon-auto367144auto367144Theobroma cacaoexon
exon-auto367145auto367145Theobroma cacaoexon
exon-auto367146auto367146Theobroma cacaoexon
exon-auto367147auto367147Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto367148auto367148Theobroma cacaoCDS
CDS-auto367149auto367149Theobroma cacaoCDS
CDS-auto367150auto367150Theobroma cacaoCDS
CDS-auto367151auto367151Theobroma cacaoCDS
CDS-auto367152auto367152Theobroma cacaoCDS
CDS-auto367153auto367153Theobroma cacaoCDS
CDS-auto367154auto367154Theobroma cacaoCDS
CDS-auto367155auto367155Theobroma cacaoCDS
CDS-auto367156auto367156Theobroma cacaoCDS
CDS-auto367157auto367157Theobroma cacaoCDS
CDS-auto367158auto367158Theobroma cacaoCDS
CDS-auto367159auto367159Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t007090.1 ID=Tc07v2_t007090.1|Name=Tc07v2_t007090.1|organism=Theobroma cacao|type=mRNA|length=1578bp
ATGGAACCCCAGACTCCCACCAGTTCGCAACCCATACTCTACGAGACCCT
AACCCCAATTTCTCTCCCCTCTTTGCCTGCAGCCCAATCTCCGCCGTTCA
ATGAACCGCCTTTCGAACCCTACACCGTTTTCCGCAACGAAATCTCTCTA
TCAGCTGAAAATTCCATCTCCTTGGACTCGGCGGCGCCGGATTATTTCTC
CCTTGATGTTAATGACCCGGCTGAGCCGGTGATAGTTCAGGCTTCGGTCT
CGGCTTGGGATGAACCGGAGCCGAAGACGCCGGGTGTTGTGGATGAGCCG
AGGCTTGAGAACGAGTGGTGGTTTCGTGGGAATAGTAGGTTTAAGAGTCC
AATGCTTCAGTTGCATAAAGAGATAGTGGACTTCTGTGATTTCTTATCCC
CAACTCCAGAAGAGCAAGCAGCACGTGATGCAGCTGTAGACTCTGTTTTT
GATGTTATCAAATACATATGGCCTGCATGCGGGCCAGAAGTTTTTGGGTC
ATTCAGGACAGGACTTTATTTACCAACAAGTGATATTGATGTTGTGATTC
TTGGGTCAGGTATAAAAAATCCACAGACTGGTTTGCATGCTCTTTCCAGG
GCATTATCTCAAAAGGGAATTGCAAAAAAGATGCAGGTGATTGCAAAAGC
TCGTGTGCCAATAGTTAAATTTGTAGAAAAGAAAAGTGGTGTTGCATTTG
ATATAAGCTTTGATGTGGATAATGGACCGAAAGCAGCTGACTTTATCAAG
GAAGCGGTACTGAAATGGCCTCAATTACGACCATTGTGTTTGATTTTGAA
AGTATTTTTGCAACAGAGAGACCTGAATGAGGTATATTCAGGTGGAATAG
GTTCATATGCTCTCCTTGCAATGCTCATGGCCATGTTGCAGAGTCTGCAT
GAATCCCAAGCTTATCAAGAACATAACTTGGGGATTCTCTTGGTACACTT
TTTTGATTTTTATGGACGCAAATTGAACACTGCGGATGTTGGTGTGTCTT
GCAATGGGAGAGGAGGCACTTTCTTCTTGAAGAGTAGCAGAGGGTTTTCA
AACAAAGGACGGCCGTTTCTCATCTCCATTGAGGATCCACAGATTAGATC
AGCTTTTGGGATGGCTCTTAGTACCTTGACTAATCCGAAGGCCATCTTGT
CTCTGGGCCCCAACAGAAGCATTCTTGGTACCATAATTAGACCAGATCCA
GTTTTGCTCGAGCGCAAAGGAGGATCTAGTGGTGGTGTCACTTTTAGTAG
CTTGCTTCCTGGAGCTGGGGAGCCTTTACAGCCATTGTATGGAGAGCAGC
AGGACATTTTGTGCAATTGGCAGTTGGATGATGAAGAACCACTGCCTCGA
GGAGATGGTGTTGATGTAGATGTTAGTGCTCAATCCTCTGGAAGAAAGAG
GAAATCTGCTTCCAAAGAAAGATCCAAAAAGAAAAAGGTAAAAGAAAATG
GTGATGCAAGAAAGGTCTGGCATGAAGAAACAGTTTTTAAGAAAGAAAAG
AGTACAAGGAAGAAAGGTTACCATAATGATGCCAATGGTTTTGGTCGTCA
TGGTGGTAGTTCCTCTTGGAGTCGCTAG
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protein sequence of Tc07v2_p007090.1

>Tc07v2_p007090.1 ID=Tc07v2_p007090.1|Name=Tc07v2_p007090.1|organism=Theobroma cacao|type=polypeptide|length=526bp
MEPQTPTSSQPILYETLTPISLPSLPAAQSPPFNEPPFEPYTVFRNEISL
SAENSISLDSAAPDYFSLDVNDPAEPVIVQASVSAWDEPEPKTPGVVDEP
RLENEWWFRGNSRFKSPMLQLHKEIVDFCDFLSPTPEEQAARDAAVDSVF
DVIKYIWPACGPEVFGSFRTGLYLPTSDIDVVILGSGIKNPQTGLHALSR
ALSQKGIAKKMQVIAKARVPIVKFVEKKSGVAFDISFDVDNGPKAADFIK
EAVLKWPQLRPLCLILKVFLQQRDLNEVYSGGIGSYALLAMLMAMLQSLH
ESQAYQEHNLGILLVHFFDFYGRKLNTADVGVSCNGRGGTFFLKSSRGFS
NKGRPFLISIEDPQIRSAFGMALSTLTNPKAILSLGPNRSILGTIIRPDP
VLLERKGGSSGGVTFSSLLPGAGEPLQPLYGEQQDILCNWQLDDEEPLPR
GDGVDVDVSAQSSGRKRKSASKERSKKKKVKENGDARKVWHEETVFKKEK
STRKKGYHNDANGFGRHGGSSSWSR*
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