Tc07v2_t006340.1

Overview
NameTc07v2_t006340.1
Unique NameTc07v2_t006340.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1422
Properties
Property NameValue
NoteUridine 5'-monophosphate synthase
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producturidine 5'-monophosphate synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593861
GenbankXM_007021260.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g006340Tc07v2_g006340Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p006340.1Tc07v2_p006340.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto366157auto366157Theobroma cacaoexon
exon-auto366158auto366158Theobroma cacaoexon
exon-auto366159auto366159Theobroma cacaoexon
exon-auto366160auto366160Theobroma cacaoexon
exon-auto366161auto366161Theobroma cacaoexon
exon-auto366162auto366162Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto366163auto366163Theobroma cacaoCDS
CDS-auto366164auto366164Theobroma cacaoCDS
CDS-auto366165auto366165Theobroma cacaoCDS
CDS-auto366166auto366166Theobroma cacaoCDS
CDS-auto366167auto366167Theobroma cacaoCDS
CDS-auto366168auto366168Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t006340.1 ID=Tc07v2_t006340.1|Name=Tc07v2_t006340.1|organism=Theobroma cacao|type=mRNA|length=1422bp
ATGTCATCAACAGAGTCCCTAATCCTCCAACTCCACGAAATCTCTGCTGT
CAAATTCGGCAACTTCAAGCTAAAATCCGGCATCTCTTCCCCTATCTACA
TAGACTTGCGCCTCATAGTCTCCTACCCTTCCCTCCTCCGCCAAATCTCC
CACTCTCTCATCTCCGCTCTCCCTCCCCAAACACCCTATAACCTCATCTG
CGGCGTTCCTTACACCGCTCTCCCCATAGCCACCTCCATTTCTGTCGACT
CCTCCATCCCCATGCTCATGCGCCGCAAAGAAGTCAAAGATTATGGCACT
GCCAAGTCCATCGAAGGCGTTTACGAAAAGGGTCAGGTTTGTTTGATTGT
AGAAGACCTTGTAACATCCGGAGCATCCGTTCTTGAAACAGCGACGCCGC
TACGAGCGTTGGGAATCAATGTGACCGACGCCGTCGTGGTTATTGATAGG
GAACAAGGCGGGAGGGAGACGTTGGAAGAGAATGGGATTAAACTTCACGC
GCTGTTTACTTTGACGGAGATGGTCAAGGTTTTGAGAGCGAAAGGGAAAT
TAGAGGAAGAGATGGAAGGGTTGGTTATGAGGTTTTTGGAGGAGAATAAG
AAAGTGGCTGTGCCTAAGGTGGAGAAAGTGAGGATTAAGAGTTTGGCGTT
TGAAGACAGGGCTAAGTTAGCTAAGAATCCAACTGGGAAAAAGCTCTTTG
AGGTTATGGTTAAGAAAGAGAGTAATCTTTGTTTGGCTGCGGATGTTGGG
ACTGCTGCTGAGTTGCTTGATATTGCTGAGAAGGTTGGACCAGAAATCTG
TCTATTGAAGACCCATGTTGATATATTGCCTGATTTCACTCCAGATTTTG
GTTCTAAACTTCGTGCGATTGCAGAAAGACATAACTTTTTGATCTTTGAA
GACCGTAAGTTTGCAGACATTGGTAACACAGTCACAATGCAGTATGAAGG
AGGTATCTTCCATATATTGGATTGGGCTGATATTGTTAATGCACACATAA
TATCTGGTCCTGGAATTGTGGATGGTCTCAAATTGAAGGGTTTGCCACGT
GGTAGGGGCCTGTTGCTACTTGCTGAGATGAGCTCTGCCGGTAACCTTGC
CAAGGGAGACTACACAGCTGCTGCAGTAAAAATTGCTGACGAGCATTCTG
ATTTTGTCATTGGTTTCATCTCAGTCAATCCAGCATCCTGGGCTGGGGCA
CCAGTTAATCCAGCATTCATTCAGGCAACTCCCGGAGTTCAAATGGTTAA
GGGTGGTGATGCCCTAGGCCAGCAGTATAACACTCCATATTCTGTCATCT
TTGATAGGGGTAGTGACATAATAATTGTGGGTCGTGGAATCATTAAGGCA
GCAAACCCTGCAGAGGCAGCTCGTGAATACCGCCTTCAAGGATGGGAGGC
ATACATGGCTAAATGCACTTAG
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protein sequence of Tc07v2_p006340.1

>Tc07v2_p006340.1 ID=Tc07v2_p006340.1|Name=Tc07v2_p006340.1|organism=Theobroma cacao|type=polypeptide|length=474bp
MSSTESLILQLHEISAVKFGNFKLKSGISSPIYIDLRLIVSYPSLLRQIS
HSLISALPPQTPYNLICGVPYTALPIATSISVDSSIPMLMRRKEVKDYGT
AKSIEGVYEKGQVCLIVEDLVTSGASVLETATPLRALGINVTDAVVVIDR
EQGGRETLEENGIKLHALFTLTEMVKVLRAKGKLEEEMEGLVMRFLEENK
KVAVPKVEKVRIKSLAFEDRAKLAKNPTGKKLFEVMVKKESNLCLAADVG
TAAELLDIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAERHNFLIFE
DRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVDGLKLKGLPR
GRGLLLLAEMSSAGNLAKGDYTAAAVKIADEHSDFVIGFISVNPASWAGA
PVNPAFIQATPGVQMVKGGDALGQQYNTPYSVIFDRGSDIIIVGRGIIKA
ANPAEAAREYRLQGWEAYMAKCT*
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