Tc07v2_t005170.2

Overview
NameTc07v2_t005170.2
Unique NameTc07v2_t005170.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1263
Properties
Property NameValue
NotePutative beta-glucosidase 41
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productputative beta-glucosidase 41, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593729
GenbankXM_018124056.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g005170Tc07v2_g005170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p005170.2Tc07v2_p005170.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto364012auto364012Theobroma cacaoexon
exon-auto364013auto364013Theobroma cacaoexon
exon-auto364014auto364014Theobroma cacaoexon
exon-auto364015auto364015Theobroma cacaoexon
exon-auto364016auto364016Theobroma cacaoexon
exon-auto364017auto364017Theobroma cacaoexon
exon-auto364018auto364018Theobroma cacaoexon
exon-auto364019auto364019Theobroma cacaoexon
exon-auto364020auto364020Theobroma cacaoexon
exon-auto364021auto364021Theobroma cacaoexon
exon-auto364022auto364022Theobroma cacaoexon
exon-auto364023auto364023Theobroma cacaoexon
exon-auto364024auto364024Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto364025auto364025Theobroma cacaoCDS
CDS-auto364026auto364026Theobroma cacaoCDS
CDS-auto364027auto364027Theobroma cacaoCDS
CDS-auto364028auto364028Theobroma cacaoCDS
CDS-auto364029auto364029Theobroma cacaoCDS
CDS-auto364030auto364030Theobroma cacaoCDS
CDS-auto364031auto364031Theobroma cacaoCDS
CDS-auto364032auto364032Theobroma cacaoCDS
CDS-auto364033auto364033Theobroma cacaoCDS
CDS-auto364034auto364034Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t005170.2 ID=Tc07v2_t005170.2|Name=Tc07v2_t005170.2|organism=Theobroma cacao|type=mRNA|length=1263bp
ATGAAGGATTTGGGAATGGATGCTTACAGATTTTCAATATCTTGGTCAAG
AATATTTCCGAATGGAGCAGGGGAATCTAATGTGGAAGGAATAAACTACT
ACAACAGACTCATTGATGCTTTGATACAGAAAGGAATCCAGCCTTATGTA
ACTCTATATCATTGGGATCTTCCACAGATGCTTGAGGATAAATATGAAGG
ATGGTTGAGTAGACAGATAGTAGATGACTTTGAGCATTTCGCCTTTACTT
GCTTCCAAGCTTTTGGAGACAGAGTAAAACACTGGATCACCTTCAACGAA
CCTCACGGTTTCTCAATCCAGGGTTATGACTCAGGCATTCAAGCTCCTGG
AAGGTGCTCAATTCTTGGGGGTCTACTTTGTAAGACAGGAAACTCATCCA
CTGAACCATATATTGTAGCTCACAACATCCTACTGTCTCATGCTGCTGCT
TATCACAGTTACCGGAAAAATTTCAAGGAAAGACAGGGAGGACAAATTGG
AATGGCACTGGATGCCAAATGGTATGAACCAATCTCTGAAAGCGACGAGG
ATAAAGATGCAGCAAATAGAGCAATGGATTTTGGGATTGGATGGTTCCTT
GATCCACTTTTCTTTGGTGACTATCCTCTTTCAATGAAAAGGCTTGTTGG
AGAGAGGTTACCTCAAGTTTTACCAGAGATGTCCAAAATGCTACTGGGGT
CTCTGGACTTCATTGGCATAAACCATTATACCACATTATATGCCAGGAAT
GACAGAACTCGCATCAGGAAACTAATCTTGCAGGATGCTTCATCTGATGC
TGCTGTCATTACTACCTCTTTTCGAGGTGGAGCTCCAATCGGAGAAAGAG
CAGCTTCACGCTGGCTACGTGTTGTCCCATGGGGCATCAGGAAGTTGGCT
AGATATGTGAAAGATAAATATGGGAATCCACCTGTTATAATAACAGAAAA
TGGCATGGATGATCTAAATAGCCCATTCATAAACATGAAAAAGGCCTTGC
AAGATGACAAGAGGATAAAATTCCACAGGGATTATCTGTCAAACCTATCA
GCTGCTATAAGGGAAGACAACTGTGATGTGCGGGGTTATTTTGTGTGGTC
TTTGCTGGATAACTGGGAATGGAACTCTGGCTACACCGTCCGGTTTGGAC
TCTACTTTGTGGACTACAAAAACAATCTTACAAGGGTTCCAAAGGCTTCT
GTTGAATGGTTTAAAGGTGTACTCAGACCAAGTCATTTGAGCAATTTGAG
GAACCAGATTTAA
back to top

protein sequence of Tc07v2_p005170.2

>Tc07v2_p005170.2 ID=Tc07v2_p005170.2|Name=Tc07v2_p005170.2|organism=Theobroma cacao|type=polypeptide|length=421bp
MKDLGMDAYRFSISWSRIFPNGAGESNVEGINYYNRLIDALIQKGIQPYV
TLYHWDLPQMLEDKYEGWLSRQIVDDFEHFAFTCFQAFGDRVKHWITFNE
PHGFSIQGYDSGIQAPGRCSILGGLLCKTGNSSTEPYIVAHNILLSHAAA
YHSYRKNFKERQGGQIGMALDAKWYEPISESDEDKDAANRAMDFGIGWFL
DPLFFGDYPLSMKRLVGERLPQVLPEMSKMLLGSLDFIGINHYTTLYARN
DRTRIRKLILQDASSDAAVITTSFRGGAPIGERAASRWLRVVPWGIRKLA
RYVKDKYGNPPVIITENGMDDLNSPFINMKKALQDDKRIKFHRDYLSNLS
AAIREDNCDVRGYFVWSLLDNWEWNSGYTVRFGLYFVDYKNNLTRVPKAS
VEWFKGVLRPSHLSNLRNQI*
back to top