Tc07v2_t003730.3

Overview
NameTc07v2_t003730.3
Unique NameTc07v2_t003730.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length618
Properties
Property NameValue
NoteVacuolar protein sorting-associated protein 22 homolog 1
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productvacuolar protein sorting-associated protein 22 homolog 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593566
GenbankXM_018125227.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g003730Tc07v2_g003730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p003730.3Tc07v2_p003730.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto361465auto361465Theobroma cacaoexon
exon-auto361466auto361466Theobroma cacaoexon
exon-auto361467auto361467Theobroma cacaoexon
exon-auto361468auto361468Theobroma cacaoexon
exon-auto361469auto361469Theobroma cacaoexon
exon-auto361470auto361470Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto361471auto361471Theobroma cacaoCDS
CDS-auto361472auto361472Theobroma cacaoCDS
CDS-auto361473auto361473Theobroma cacaoCDS
CDS-auto361474auto361474Theobroma cacaoCDS
CDS-auto361475auto361475Theobroma cacaoCDS
CDS-auto361476auto361476Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t003730.3 ID=Tc07v2_t003730.3|Name=Tc07v2_t003730.3|organism=Theobroma cacao|type=mRNA|length=618bp
ATGAGAAGAAGACCTGGAATTGGAGGCTTACAGACAGCTGCAGCGGCTAG
GGATCAATATCGATTACTGGGAGAAAATGTAGCCAAGTTAAGAACCGATC
TCATGAAAGAACAACTCGCTACCTTTCGTTCTCAGCTCGAAGAATTCGCT
CGAAAACACAAGACAGGGGTGCAAATTGTTGAGATTTGCTTGTCGACTAG
GCCCCTTAATGGAGGTTTGATCGACCTGCAGGAACTTTGCAAATTGCTTC
GTCAGAAACGAAAACATGATCGTGAAGCTGTTTCTGAGGATGACTGTTTA
CGTGCTATAAGTAAGCTGAAGACATTGGGTAGTGGATTTGAGGTGATTTC
TGCTGGAAAGAAAAAGCTTGTTCGATCTGTTCCAACTGAGTTGAAGAAAG
ACCATAACGAAATTCTGGAGCTGGCACAGGCTCAAGGGTATGTGACCGTT
GATGAGGTAGAGAGACGGCTTTCCTGGACACATGGACGTGCCATCGACGC
CCTTGATACTTTATTAGATGAAGGTCTTGCGATGATTGATGATGGCCATA
GTGATGGCAAACGCCGATATTGGTTCCCCTGTGTATCCTCCATCTCCTCG
TTTGGAGCTGATAGTTAA
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protein sequence of Tc07v2_p003730.3

>Tc07v2_p003730.3 ID=Tc07v2_p003730.3|Name=Tc07v2_p003730.3|organism=Theobroma cacao|type=polypeptide|length=206bp
MRRRPGIGGLQTAAAARDQYRLLGENVAKLRTDLMKEQLATFRSQLEEFA
RKHKTGVQIVEICLSTRPLNGGLIDLQELCKLLRQKRKHDREAVSEDDCL
RAISKLKTLGSGFEVISAGKKKLVRSVPTELKKDHNEILELAQAQGYVTV
DEVERRLSWTHGRAIDALDTLLDEGLAMIDDGHSDGKRRYWFPCVSSISS
FGADS*
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