Tc07v2_t002490.1

Overview
NameTc07v2_t002490.1
Unique NameTc07v2_t002490.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1644
Properties
Property NameValue
NoteEH domain-containing protein 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductEH domain-containing protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593431
GenbankXM_018124729.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g002490Tc07v2_g002490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p002490.1Tc07v2_p002490.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto359213auto359213Theobroma cacaoexon
exon-auto359214auto359214Theobroma cacaoexon
exon-auto359215auto359215Theobroma cacaoexon
exon-auto359216auto359216Theobroma cacaoexon
exon-auto359217auto359217Theobroma cacaoexon
exon-auto359218auto359218Theobroma cacaoexon
exon-auto359219auto359219Theobroma cacaoexon
exon-auto359220auto359220Theobroma cacaoexon
exon-auto359221auto359221Theobroma cacaoexon
exon-auto359222auto359222Theobroma cacaoexon
exon-auto359223auto359223Theobroma cacaoexon
exon-auto359224auto359224Theobroma cacaoexon
exon-auto359225auto359225Theobroma cacaoexon
exon-auto359226auto359226Theobroma cacaoexon
exon-auto359227auto359227Theobroma cacaoexon
exon-auto359228auto359228Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto359229auto359229Theobroma cacaoCDS
CDS-auto359230auto359230Theobroma cacaoCDS
CDS-auto359231auto359231Theobroma cacaoCDS
CDS-auto359232auto359232Theobroma cacaoCDS
CDS-auto359233auto359233Theobroma cacaoCDS
CDS-auto359234auto359234Theobroma cacaoCDS
CDS-auto359235auto359235Theobroma cacaoCDS
CDS-auto359236auto359236Theobroma cacaoCDS
CDS-auto359237auto359237Theobroma cacaoCDS
CDS-auto359238auto359238Theobroma cacaoCDS
CDS-auto359239auto359239Theobroma cacaoCDS
CDS-auto359240auto359240Theobroma cacaoCDS
CDS-auto359241auto359241Theobroma cacaoCDS
CDS-auto359242auto359242Theobroma cacaoCDS
CDS-auto359243auto359243Theobroma cacaoCDS
CDS-auto359244auto359244Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t002490.1 ID=Tc07v2_t002490.1|Name=Tc07v2_t002490.1|organism=Theobroma cacao|type=mRNA|length=1644bp
ATGGAGATCGGAGCCGGTCGGATCGGTTCATGCTCTAAAGAACACCAGCA
GATTTATCAAGAGTGGTTTAGCTTTGTTGATTCAGATAATGATGGCCGCA
TTACCGGAACTGATGCAATAAAGTTCTTCGGTATGTCAAATTTATCGCGA
CAAGATCTTAAGCAGGTGTGGGCGATCGCGGATTCTAAGAGACAGGGATA
TCTTGGTTTCAAAGAATTTGTCTTTGCTATGCAGCTGGTTTCTCTGGCAC
AAGATGGTCATGAAATATCACATGATCTCCTGAATGGTGATGTTGACTTT
GAGAATGCGAAACCTCCTGTAATGGAAGGTTTGGATGCATTAATCATGAA
GAAGAAACACTCTTCAAAGTCAACTAGTCCTGCTAGCAATGCCAATGGTA
GTTCTCCAATGCAATCATCACCTGCCGCTCAATGGTTTTCTTCAAAATCA
TCAAAGAAGATATCTATGTCCTCTGTGACTTCAATCATAGATGGCTTAAA
GAGACTGTACATTCAAAAGTTGAAGCCTTTAGAAGTTACATATCGTTTTA
ATGATTTTGTATCCCCATTGTTGACAAATAGTGATTTTGATGCCAAACCA
ATGGTCATGCTTTTGGGTCAATATTCTACTGGGAAAACAACCTTCATTAA
ACATTTGCTTAAAAGTAGTTATCCAGGAGCTCACATTGGACCTGAACCAA
CGACTGACAGATTTGTTGTTGTTATGTCGGGAACTGATGAAAGAAGTGTT
CCAGGGAACACTATTGCTGTCCAAGCGGACATGCCATTCAGTGGTCTCAC
TACCTTCGGAACTGCATTTTTGTCAAAGTTTGAGTGTTCTCAAATGCCAC
ATCCTCTGTTGGAGCACATAACATTTGTAGATACTCCTGGAGTGTTATCA
GGAGAAAAACAACGAACACAACGAGCCTATGATTTTACAGGTGTAACATC
ATGGTTTGCTGCAAAATGTGATCTCATTCTTCTTTTGTTTGATCCTCACA
AGCTAGATGTAAGTGATGAGTTCAAGCGTGTAATTTATTCTTTGCGTGGT
CATGATGACAAGATTCGTGTGGTTTTGAACAAGGCAGACCAAGTTGATAC
TCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAAG
TCCTTAATACCCCTGAGGTTGTGCGCGTATATATCGGTTCGTTCAATGAC
AAACCTGTAAACGAAGCTGCCACAGGTCCAATTGGGAAAGAGTTGTTCGA
AAAAGAACAAGAAGACCTTCTTGCTGACTTGAAAGATATTCCAAAAAAAG
CTTGTGATCGTCGAATAAATGAGTTTGTTAAACGTGCTAGAGCTGCCAAG
ATACATGCTCATATTATTGGTCATCTTAGAAAGGAAATGCCTACTATGAT
GGGAAAAGCGAAGACTCAACAGAGACTAATCGATAATTTGGCCGATGAAT
TTGGAAAAGTTCAAAGAGATCATCACCTACCTCCAGGGGACTTTCCAAAT
GTAGAACATTTTAGGGAGGTTTTGAGTGGTTACAACTTCGACAAATTCGA
GAAGCTAAAGCCTAAAATGATTCAAGCTGTTGATGACATGCTGGGTTATG
ATATCCCAGAGCTGTTGAAGACATTCAGGAATCCTTACGATTAA
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protein sequence of Tc07v2_p002490.1

>Tc07v2_p002490.1 ID=Tc07v2_p002490.1|Name=Tc07v2_p002490.1|organism=Theobroma cacao|type=polypeptide|length=548bp
MEIGAGRIGSCSKEHQQIYQEWFSFVDSDNDGRITGTDAIKFFGMSNLSR
QDLKQVWAIADSKRQGYLGFKEFVFAMQLVSLAQDGHEISHDLLNGDVDF
ENAKPPVMEGLDALIMKKKHSSKSTSPASNANGSSPMQSSPAAQWFSSKS
SKKISMSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKP
MVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGTDERSV
PGNTIAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLS
GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVIYSLRG
HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND
KPVNEAATGPIGKELFEKEQEDLLADLKDIPKKACDRRINEFVKRARAAK
IHAHIIGHLRKEMPTMMGKAKTQQRLIDNLADEFGKVQRDHHLPPGDFPN
VEHFREVLSGYNFDKFEKLKPKMIQAVDDMLGYDIPELLKTFRNPYD*
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