Tc07v2_t002300.1

Overview
NameTc07v2_t002300.1
Unique NameTc07v2_t002300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1608
Properties
Property NameValue
NoteTranscription initiation factor TFIID subunit 6
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593403
GenbankXM_007020613.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g002300Tc07v2_g002300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p002300.1Tc07v2_p002300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto358886auto358886Theobroma cacaoexon
exon-auto358887auto358887Theobroma cacaoexon
exon-auto358888auto358888Theobroma cacaoexon
exon-auto358889auto358889Theobroma cacaoexon
exon-auto358890auto358890Theobroma cacaoexon
exon-auto358891auto358891Theobroma cacaoexon
exon-auto358892auto358892Theobroma cacaoexon
exon-auto358893auto358893Theobroma cacaoexon
exon-auto358894auto358894Theobroma cacaoexon
exon-auto358895auto358895Theobroma cacaoexon
exon-auto358896auto358896Theobroma cacaoexon
exon-auto358897auto358897Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto358898auto358898Theobroma cacaoCDS
CDS-auto358899auto358899Theobroma cacaoCDS
CDS-auto358900auto358900Theobroma cacaoCDS
CDS-auto358901auto358901Theobroma cacaoCDS
CDS-auto358902auto358902Theobroma cacaoCDS
CDS-auto358903auto358903Theobroma cacaoCDS
CDS-auto358904auto358904Theobroma cacaoCDS
CDS-auto358905auto358905Theobroma cacaoCDS
CDS-auto358906auto358906Theobroma cacaoCDS
CDS-auto358907auto358907Theobroma cacaoCDS
CDS-auto358908auto358908Theobroma cacaoCDS
CDS-auto358909auto358909Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t002300.1 ID=Tc07v2_t002300.1|Name=Tc07v2_t002300.1|organism=Theobroma cacao|type=mRNA|length=1608bp
ATGAGCAACGTTCCAAAAGAAGCCATTGAAGTGGTAGCACAGAGCATTGG
AATTACCAATTTGTCCCCAGATGTTGCCCTTGCCCTCGCTCCTGATGTCG
AATATCGCGTTCGCGAGATCATGCAGGAGGCGATTAAATGCATGCGCCAT
TCGCGGCGGACGGTTCTGACAGCTGATGACGTGGACAATGCTCTTAATCT
TAGAAATGTGGAGCCGATATATGGCTTTGCCTCTCGTGATCCACTACGGT
TCAAAAGAGCTGCTGGGCATAAGGATTTGTTCTACATTGATGACAAGGAT
GTGGAGTTTAAAGAAGTGATTGAAGCACCTTTATCGAAAGCGCCACTTGA
GACATCTGTTACTTCTCACTGGCTAGCGATCGAAGGCGTTCAACCTGCAA
TTCCAGAAAATGCTTCGGTTGAAGCACCTTCTGATGGCAAAAGGGCTGAA
CACAAGGAAGATGGACTTTCTGTTGATGTTAAATTACCTGTTAAGCACGT
ATTATCTAGAGACCTTCAACTTTACTTTGAGAAAATTGTGGAGCTTACTT
TGAATAGATCTGTCTCTGTCGTCTTTAATCGAGCATTACTGAGCTTGGCA
ACAGACCCAGGAGTCCATCCTTTAACTCCTTATTTCACGTATTTCATTAC
TGATGAGGTTGCACGTAATTTAAATAATTTCCGTCTCTTATTTGCATTGA
TGCGTGTTGCCTGGAGCCTTGTTCAGAATGAAAATATACACATTGAACCT
TATTTACACCAATTGATGCCATCTGTTATTACCTGCCTTGTTGCAAAAAG
ATTAGGGAATAAATTCACTGACAATCACTGGGAACTTAGAAACTTCGCAG
CAAAGCTAGTGGCATCAATATGCAAAAGATTTGGGCATGTTTATCACAAT
CTTCAGCCACGTGTGACAAGGACTCTGCTCCATGCTTTTTTGGACCCAAC
AAAAACATTGCCTCAGCATTATGGTGCACTTCGAGGTTTAGCAGCCCTTG
GACCCAGCGTGGTTCGTCTACTTATACTACCAAATCTTGAGGCATATTTG
CAACTCCTTGAACCAGAAATGCAGCCTGAGAAGCAGAAGAATGAAATAAA
AAGGCATGAAGCTTGGTGTGTTTATGGTGCCTTGCTGCGTGCAGCTGGGC
TGTGCATGTATGATAGGCTTAAAATGTTCCCTGGTCTGCTAGCCCCTCCA
AATCGTCCTGTCTGGAAAAGCAGTGGAAAAGTTGTGACAAGAAATAAACG
CAAAGCAAGCACAGACAACTTGATGCAGCAACCACCGCTCAAGAAAATGG
CTACCGACAGTGCAAGTGGTATGATGCCGATAAATTCCATGCAAGTTGAC
ATGCAAGGGGCAGTTGGTGGCTTTTCCGCCACAATGGGAGGTTCCAACAT
TGGTGTATCATCAATATCACGGCAGTTATCAAATGATAACATATCGGGAA
GGGAGGCCAGTGGTCGAGTTTTAAAGACTTCAACAGTTTTAGCTCAGGCT
TGGAAGGAGGACACACATGCTGGGAACTTGCTAGCATCACTATTTGAACT
TTTTGGTGAAAGCATGTTGTCCTTTACCCCCAAACCCGAGCTTTCCATCT
TCCTTTGA
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protein sequence of Tc07v2_p002300.1

>Tc07v2_p002300.1 ID=Tc07v2_p002300.1|Name=Tc07v2_p002300.1|organism=Theobroma cacao|type=polypeptide|length=536bp
MSNVPKEAIEVVAQSIGITNLSPDVALALAPDVEYRVREIMQEAIKCMRH
SRRTVLTADDVDNALNLRNVEPIYGFASRDPLRFKRAAGHKDLFYIDDKD
VEFKEVIEAPLSKAPLETSVTSHWLAIEGVQPAIPENASVEAPSDGKRAE
HKEDGLSVDVKLPVKHVLSRDLQLYFEKIVELTLNRSVSVVFNRALLSLA
TDPGVHPLTPYFTYFITDEVARNLNNFRLLFALMRVAWSLVQNENIHIEP
YLHQLMPSVITCLVAKRLGNKFTDNHWELRNFAAKLVASICKRFGHVYHN
LQPRVTRTLLHAFLDPTKTLPQHYGALRGLAALGPSVVRLLILPNLEAYL
QLLEPEMQPEKQKNEIKRHEAWCVYGALLRAAGLCMYDRLKMFPGLLAPP
NRPVWKSSGKVVTRNKRKASTDNLMQQPPLKKMATDSASGMMPINSMQVD
MQGAVGGFSATMGGSNIGVSSISRQLSNDNISGREASGRVLKTSTVLAQA
WKEDTHAGNLLASLFELFGESMLSFTPKPELSIFL*
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