Tc07v2_t002050.2

Overview
NameTc07v2_t002050.2
Unique NameTc07v2_t002050.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1440
Properties
Property NameValue
NoteRNA-binding family protein isoform 6
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productheterogeneous nuclear ribonucleoprotein 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593376
GenbankXM_018124572.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g002050Tc07v2_g002050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p002050.2Tc07v2_p002050.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto358404auto358404Theobroma cacaoexon
exon-auto358405auto358405Theobroma cacaoexon
exon-auto358406auto358406Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto358407auto358407Theobroma cacaoCDS
CDS-auto358408auto358408Theobroma cacaoCDS
CDS-auto358409auto358409Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t002050.2 ID=Tc07v2_t002050.2|Name=Tc07v2_t002050.2|organism=Theobroma cacao|type=mRNA|length=1440bp
ATGATGGTGATTGCAGATAAGATGGAATCAGATCTTGGTAAACTCTTCAT
TGGTGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAGTATTTCA
GGAAGTATGGGGAAGTGGTGGAAGCAATGATCATGAGAGATCGTGTCACA
GGTCGTGCCCGTGGCTTCGGTTTCGTTGTCTTTGCTGATCCTGCTGTTGC
TGAGAGGGTAATTATGGATAAGCATATGATTGATGGTCGCACGGTTGAGG
CAAAGAAGGCTGTTCCTAGGGATGATCAACACATTCTAAACAGGAACGTG
AGTAGCATTACTGGATCTCCTGGTCCTGGACGCACAAAAAAGATTTTTGT
TGGAGGTTTAGCATCTACAGTCACCGAGGGTGACTTTAAGAAGTACTTTG
ATCAGTTTGGTTCAATTACTGATGTTGTGGTGATGTATGATCATAACACG
CAGAGGCCGAGAGGGTTCGGCTTCATTACTTATGATTCAGAGGACGCGGT
AGACAGAGTCCTGCATAAAACATTCCATGAACTCAACGGGAAATTGGTTG
AGGTCAAGAGGGCAGTTCCTAAAGAACTATCTCCAGGCCCCAGCCGCAGC
CCTATGATTGGATATAATTATGGCTTGAGTAGGGCTGCCAACTTCCTCAA
TAGTTACGCTCAGGGATATAATCTTAGCCCACTTGGAGGATTTGGAGTCA
GGATGGATGGTAGGTTTAATCCTCTTGCTAGTGGTCGAACTGGGTTTCCT
CCATTTAGTACCACTGGATATGGAATAGGTATGAATATGGAACCAGGAAT
GAGTCCAAGCTATGGTGGGAGTTCCAACTTTGGCAACGGTCTTGGATATG
GGAGAATAATTAGTCCCTATTACAGTGGGAATTCAAACAGGTATAACACA
CCTATTGGCTATGGTGTAGGAAGTGGAAGAAATGATTCTGTTTTGAGCTC
TGCTACTAGGAATGTCTGGGGAAATGGAGGCCTAAGCAATGCCACAAATG
CTTCCAGCCCTGGTGGTTACTTGGGGTCTGGAAGTGGGAGTTTTGGTTCT
TTAGGAAATAGTGGAGTAAATTGGAGCCCTTCTCCTGCACAAAGTGGAGG
GAATGCTTCTGGCTATACTGGGAGTGCTGGTTATGGGAATGCTGATGATA
ACTATGGTTTGGGAGGGGTAGGATATGGAAGAAACGGTGCAACTGTTGCA
GCTCCAACATCATCATTTGCTGGGTCAACTGGTAGTTTTGAGGGGTCCTA
TGGGGATATCTACCGCAGTGGTTCAGTTTATGGTGACTCAACTTGGCGGT
CTGCAACTCCTGACTTAGATGGCTCTAGCTCATTCAGTTATGGGCTTGGC
AATATATCTTCAGATGTTGCTGTGCGAACTTCTGAGGATTATGTTGGAAG
TTACAGTGTTGCAAGTAGACAGTCTAATAGAGATACTTGA
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protein sequence of Tc07v2_p002050.2

>Tc07v2_p002050.2 ID=Tc07v2_p002050.2|Name=Tc07v2_p002050.2|organism=Theobroma cacao|type=polypeptide|length=480bp
MMVIADKMESDLGKLFIGGISWDTDEERLKEYFRKYGEVVEAMIMRDRVT
GRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQHILNRNV
SSITGSPGPGRTKKIFVGGLASTVTEGDFKKYFDQFGSITDVVVMYDHNT
QRPRGFGFITYDSEDAVDRVLHKTFHELNGKLVEVKRAVPKELSPGPSRS
PMIGYNYGLSRAANFLNSYAQGYNLSPLGGFGVRMDGRFNPLASGRTGFP
PFSTTGYGIGMNMEPGMSPSYGGSSNFGNGLGYGRIISPYYSGNSNRYNT
PIGYGVGSGRNDSVLSSATRNVWGNGGLSNATNASSPGGYLGSGSGSFGS
LGNSGVNWSPSPAQSGGNASGYTGSAGYGNADDNYGLGGVGYGRNGATVA
APTSSFAGSTGSFEGSYGDIYRSGSVYGDSTWRSATPDLDGSSSFSYGLG
NISSDVAVRTSEDYVGSYSVASRQSNRDT*
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