Tc07v2_t002050.1

Overview
NameTc07v2_t002050.1
Unique NameTc07v2_t002050.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1425
Properties
Property NameValue
NoteRNA-binding family protein isoform 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productheterogeneous nuclear ribonucleoprotein 1, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593376
GenbankXM_018124573.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g002050Tc07v2_g002050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p002050.1Tc07v2_p002050.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto358394auto358394Theobroma cacaoexon
exon-auto358395auto358395Theobroma cacaoexon
exon-auto358396auto358396Theobroma cacaoexon
exon-auto358397auto358397Theobroma cacaoexon
exon-auto358398auto358398Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto358399auto358399Theobroma cacaoCDS
CDS-auto358400auto358400Theobroma cacaoCDS
CDS-auto358401auto358401Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t002050.1 ID=Tc07v2_t002050.1|Name=Tc07v2_t002050.1|organism=Theobroma cacao|type=mRNA|length=1425bp
ATGGAATCAGATCTTGGTAAACTCTTCATTGGTGGGATATCTTGGGACAC
CGATGAGGAACGTCTCAAGGAGTATTTCAGGAAGTATGGGGAAGTGGTGG
AAGCAATGATCATGAGAGATCGTGTCACAGGTCGTGCCCGTGGCTTCGGT
TTCGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGGGTAATTATGGATAA
GCATATGATTGATGGTCGCACGGTTGAGGCAAAGAAGGCTGTTCCTAGGG
ATGATCAACACATTCTAAACAGGAACGTGAGTAGCATTACTGGATCTCCT
GGTCCTGGACGCACAAAAAAGATTTTTGTTGGAGGTTTAGCATCTACAGT
CACCGAGGGTGACTTTAAGAAGTACTTTGATCAGTTTGGTTCAATTACTG
ATGTTGTGGTGATGTATGATCATAACACGCAGAGGCCGAGAGGGTTCGGC
TTCATTACTTATGATTCAGAGGACGCGGTAGACAGAGTCCTGCATAAAAC
ATTCCATGAACTCAACGGGAAATTGGTTGAGGTCAAGAGGGCAGTTCCTA
AAGAACTATCTCCAGGCCCCAGCCGCAGCCCTATGATTGGATATAATTAT
GGCTTGAGTAGGGCTGCCAACTTCCTCAATAGTTACGCTCAGGGATATAA
TCTTAGCCCACTTGGAGGATTTGGAGTCAGGATGGATGGTAGGTTTAATC
CTCTTGCTAGTGGTCGAACTGGGTTTCCTCCATTTAGTACCACTGGATAT
GGAATAGGTATGAATATGGAACCAGGAATGAGTCCAAGCTATGGTGGGAG
TTCCAACTTTGGCAACGGTCTTGGATATGGGAGAATAATTAGTCCCTATT
ACAGTGGGAATTCAAACAGGTATAACACACCTATTGGCTATGGTGTAGGA
AGTGGAAGAAATGATTCTGTTTTGAGCTCTGCTACTAGGAATGTCTGGGG
AAATGGAGGCCTAAGCAATGCCACAAATGCTTCCAGCCCTGGTGGTTACT
TGGGGTCTGGAAGTGGGAGTTTTGGTTCTTTAGGAAATAGTGGAGTAAAT
TGGAGCCCTTCTCCTGCACAAAGTGGAGGGAATGCTTCTGGCTATACTGG
GAGTGCTGGTTATGGGAATGCTGATGATAACTATGGTTTGGGAGGGGTAG
GATATGGAAGAAACGGTGCAACTGTTGCAGCTCCAACATCATCATTTGCT
GGGTCAACTGGTAGTTTTGAGGGGTCCTATGGGGATATCTACCGCAGTGG
TTCAGTTTATGGTGACTCAACTTGGCGGTCTGCAACTCCTGACTTAGATG
GCTCTAGCTCATTCAGTTATGGGCTTGGCAATATATCTTCAGATGTTGCT
GTGCGAACTTCTGAGGATTATGTTGGAAGTTACAGTGTTGCAAGTAGACA
GTCTAATAGAGGAATTGCTGCCTAG
back to top

protein sequence of Tc07v2_p002050.1

>Tc07v2_p002050.1 ID=Tc07v2_p002050.1|Name=Tc07v2_p002050.1|organism=Theobroma cacao|type=polypeptide|length=475bp
MESDLGKLFIGGISWDTDEERLKEYFRKYGEVVEAMIMRDRVTGRARGFG
FVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQHILNRNVSSITGSP
GPGRTKKIFVGGLASTVTEGDFKKYFDQFGSITDVVVMYDHNTQRPRGFG
FITYDSEDAVDRVLHKTFHELNGKLVEVKRAVPKELSPGPSRSPMIGYNY
GLSRAANFLNSYAQGYNLSPLGGFGVRMDGRFNPLASGRTGFPPFSTTGY
GIGMNMEPGMSPSYGGSSNFGNGLGYGRIISPYYSGNSNRYNTPIGYGVG
SGRNDSVLSSATRNVWGNGGLSNATNASSPGGYLGSGSGSFGSLGNSGVN
WSPSPAQSGGNASGYTGSAGYGNADDNYGLGGVGYGRNGATVAAPTSSFA
GSTGSFEGSYGDIYRSGSVYGDSTWRSATPDLDGSSSFSYGLGNISSDVA
VRTSEDYVGSYSVASRQSNRGIAA*
back to top