Tc07v2_t001230.1

Overview
NameTc07v2_t001230.1
Unique NameTc07v2_t001230.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1194
Properties
Property NameValue
NotePutative pectate lyase 21
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 85 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productputative pectate lyase 21
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593288
GenbankXM_007020439.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g001230Tc07v2_g001230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p001230.1Tc07v2_p001230.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto357153auto357153Theobroma cacaoexon
exon-auto357154auto357154Theobroma cacaoexon
exon-auto357155auto357155Theobroma cacaoexon
exon-auto357156auto357156Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto357157auto357157Theobroma cacaoCDS
CDS-auto357158auto357158Theobroma cacaoCDS
CDS-auto357159auto357159Theobroma cacaoCDS
CDS-auto357160auto357160Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t001230.1 ID=Tc07v2_t001230.1|Name=Tc07v2_t001230.1|organism=Theobroma cacao|type=mRNA|length=1194bp
ATGCCGACATTATACCTCTTCTCCCTAGTCATATTCTTACATGCTGCCTC
AACATTCTCCAGACATCTACCAGAGGAGGTATCAGAAGAAGCAGGAAGGT
ACTACTCAACAAGGCAGTTGGACAGGGAACAATGCAGAACTGGTAACCCT
ATGGATGACTGCTGGAGGTGTGACCCTGAATGGGACACCAACCGGATAAG
GCTAGCTGATTGTGCAGTTGGGTTCGGGAAAGATGCTATTGGGGGAAGAG
ATGGTGAAGTTTATGTAGTAACAGATTCTGATAACGATGATCCCGTAAAT
CCTACCCCAGGCACACTTCGTCATGCTGCCATTCAAGAAGAACCGCTATG
GATCATCTTTGATCATGACATGGTCATAATGCTAAAGGAACAACTCCTGA
TCAACTCATACAAGACCATCGACGGGAGAGGACATGATATCCAAATAGCA
CATGGACCATGCATAACCTTACGCAATGTGAGTAATATCATCATACATAA
TATCTACATACATGACTGCTTACCTTCAGGATATGCCACGGTGTGGGATC
CATCACTGCAATACACAACAAGTGGTAGATCCGATGGGGATGGGATCTCA
ATATTCAGCTCGAGGGATGTGTGGATTGATCACTGCACACTTGCAAATTG
TTACGATGGGCTTATTGATGCAACGTATGGTTCAACAGCGATAACAATCT
CTAACAACTATATGCTACATCACAATGAAGTCATGCTCATGGGTCATAAT
GATGACTTCCTTGATGACAAGAACATGCAAGTAACTATTGCCTTCAATTA
CTTTGGGGAAGGCCTGGTTCAGCGAATTCCCAGATGCAGGCATGGGTACT
TTCATATCGTCAACAATGTATACAGTGGTTGGGAGATGTATGCAATTGGT
GGAAGTGCCAGCCCGACAATCAATAGCCAAGGGAATGTCTACATAGCATT
AGACAACAATTCTACAAAGGAGGTGACAAAACATGAGAACTCATTAGATG
AAGAGTGGAAGAGCTGGAATTGGAGATCAGAAGGAGATATGATGCTCAAT
GGTGCTTTCTTCACACCTTCTGGAGAAGAAGCTTCAGCAAGTTACTTAAA
AGCATCAAGCATGGCAGCAAAACCACCTTCACTTCTAACAAAGACGGCTC
AATATGCAGGAAGTCTAATTTGCCAAGTAGGACAATTGTGCTAA
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protein sequence of Tc07v2_p001230.1

>Tc07v2_p001230.1 ID=Tc07v2_p001230.1|Name=Tc07v2_p001230.1|organism=Theobroma cacao|type=polypeptide|length=398bp
MPTLYLFSLVIFLHAASTFSRHLPEEVSEEAGRYYSTRQLDREQCRTGNP
MDDCWRCDPEWDTNRIRLADCAVGFGKDAIGGRDGEVYVVTDSDNDDPVN
PTPGTLRHAAIQEEPLWIIFDHDMVIMLKEQLLINSYKTIDGRGHDIQIA
HGPCITLRNVSNIIIHNIYIHDCLPSGYATVWDPSLQYTTSGRSDGDGIS
IFSSRDVWIDHCTLANCYDGLIDATYGSTAITISNNYMLHHNEVMLMGHN
DDFLDDKNMQVTIAFNYFGEGLVQRIPRCRHGYFHIVNNVYSGWEMYAIG
GSASPTINSQGNVYIALDNNSTKEVTKHENSLDEEWKSWNWRSEGDMMLN
GAFFTPSGEEASASYLKASSMAAKPPSLLTKTAQYAGSLICQVGQLC*
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