Tc07v2_t000730.1

Overview
NameTc07v2_t000730.1
Unique NameTc07v2_t000730.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1029
Properties
Property NameValue
NoteFarnesyl pyrophosphate synthase 2
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 57 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productfarnesyl pyrophosphate synthase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593234
GenbankXM_007020358.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g000730Tc07v2_g000730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p000730.1Tc07v2_p000730.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto355996auto355996Theobroma cacaoexon
exon-auto355997auto355997Theobroma cacaoexon
exon-auto355998auto355998Theobroma cacaoexon
exon-auto355999auto355999Theobroma cacaoexon
exon-auto356000auto356000Theobroma cacaoexon
exon-auto356001auto356001Theobroma cacaoexon
exon-auto356002auto356002Theobroma cacaoexon
exon-auto356003auto356003Theobroma cacaoexon
exon-auto356004auto356004Theobroma cacaoexon
exon-auto356005auto356005Theobroma cacaoexon
exon-auto356006auto356006Theobroma cacaoexon
exon-auto356007auto356007Theobroma cacaoexon
exon-auto356008auto356008Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto356009auto356009Theobroma cacaoCDS
CDS-auto356010auto356010Theobroma cacaoCDS
CDS-auto356011auto356011Theobroma cacaoCDS
CDS-auto356012auto356012Theobroma cacaoCDS
CDS-auto356013auto356013Theobroma cacaoCDS
CDS-auto356014auto356014Theobroma cacaoCDS
CDS-auto356015auto356015Theobroma cacaoCDS
CDS-auto356016auto356016Theobroma cacaoCDS
CDS-auto356017auto356017Theobroma cacaoCDS
CDS-auto356018auto356018Theobroma cacaoCDS
CDS-auto356019auto356019Theobroma cacaoCDS
CDS-auto356020auto356020Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t000730.1 ID=Tc07v2_t000730.1|Name=Tc07v2_t000730.1|organism=Theobroma cacao|type=mRNA|length=1029bp
ATGGTTGATATCAAAGACAAGTTTAAGGAGGTCTTCTCTGTGCTCAAATC
AGAGCTTCTTAATGACCCTGCTTTTGAATTCACTGATGATTCTCGCCAAT
GGGTTGATCGTGTGGTGGAGTACAATGTTCCTGGAGGAAAGCTGAACCGA
GGGTTGTCTGTCATTGACAGCTACAAGTTTTTGAAAGATGGAAAAGAGCT
GAGTGATGAGGAGTTTTTTCTTGCATGTGCCCTTGGTTGGTGCATTGAAT
GGTTCCAAGCATATTTTCTTGTTCTTGATGATATTACGGATAATTCTCAG
CTGCGCAGAGGTCAACCATGCTGGTTCAGGCTTCCAAATGTTGGATTGAT
TGCTGTCAACGATGGGTTAATTCTGCGTAACCACATCTTCAGAATTCTCA
TGAAGCACTTTAAAGGAAAGCCTTATTACATGGATTTGCTAGAATTGTTC
AATGAGGTTGAATTTCAAACAGCCTCGGGCCAAATGATAGACTTAATCAC
CACAATTCCTGGGAAGAAAGATCTATCAAATTACACATTGTCAATTCACC
GCAGGATTGTTCAATATAAGACGGCTTATTACTCATTTCACCTTCCAGTT
GCTTGTGCATTGCTTATGGCAGGAGAGAATCTTGACAATCATACTGATGT
GAAGGATATCCTTATTGAAATTGGGACCGTTTTTCAAGTACAGGATGATT
ATCTAGATTGTTTTGGTGATCCTAATGTCATTGGCAAGGATGGAACTGAT
ATTCAAGACTTCAAGTGCTCTTGGTTGGTTGTAAAAGCTCTGGAACGTGC
AAATGAGGACCAAAAGAAACTGTTATCCGAGAATTACGGACAAGCAGATA
AAGCATGTATTGACAAAGTGAAAGAGCTCTATAATGTCCTGGATCTTCAG
AGTGTATTTACGGAGTACGAGAACCAGTGTCATGAGAATATAATGAAATC
AATCGAGGCTCATCCAAGCAAAGCAATACAAGCTGTGTTGAAGTCATTCT
GGAAGAAGATATACCAGAGGAAGAAGTAG
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protein sequence of Tc07v2_p000730.1

>Tc07v2_p000730.1 ID=Tc07v2_p000730.1|Name=Tc07v2_p000730.1|organism=Theobroma cacao|type=polypeptide|length=343bp
MVDIKDKFKEVFSVLKSELLNDPAFEFTDDSRQWVDRVVEYNVPGGKLNR
GLSVIDSYKFLKDGKELSDEEFFLACALGWCIEWFQAYFLVLDDITDNSQ
LRRGQPCWFRLPNVGLIAVNDGLILRNHIFRILMKHFKGKPYYMDLLELF
NEVEFQTASGQMIDLITTIPGKKDLSNYTLSIHRRIVQYKTAYYSFHLPV
ACALLMAGENLDNHTDVKDILIEIGTVFQVQDDYLDCFGDPNVIGKDGTD
IQDFKCSWLVVKALERANEDQKKLLSENYGQADKACIDKVKELYNVLDLQ
SVFTEYENQCHENIMKSIEAHPSKAIQAVLKSFWKKIYQRKK*
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