Tc06v2_t019800.1

Overview
NameTc06v2_t019800.1
Unique NameTc06v2_t019800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length915
Properties
Property NameValue
NoteHypothetical protein
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productkeratin-associated protein 5-3, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597332
GenbankXM_018123135.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g019800Tc06v2_g019800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p019800.1Tc06v2_p019800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto352547auto352547Theobroma cacaoexon
exon-auto352548auto352548Theobroma cacaoexon
exon-auto352549auto352549Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto352550auto352550Theobroma cacaoCDS
CDS-auto352551auto352551Theobroma cacaoCDS
CDS-auto352552auto352552Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t019800.1 ID=Tc06v2_t019800.1|Name=Tc06v2_t019800.1|organism=Theobroma cacao|type=mRNA|length=915bp
ATGGCAGAGGCTACAACAATGGTGTTGAAAGTAGACCTCCAGTGCTACCG
CTGCTATAAGAAGGTCAAGAAAGTGCTCTGTAAATTTCCAGAAATAAGAG
ATCAGAAATACGATGAGAAGGCAAACACTGTGACGATCAGTGTGGTATCT
AGAAATCCTGAGTCTATCAGGAGCAAGATATGCGACAAGGCCGGTTGTTG
CATTAAAAGCATTGAGATTAAACCTAAAGATAAACCTGGTACTGATAAGG
TTACAAAAACTACAGAGAAAGATAAATCTGGCAAGGATAAAACTAAAGAG
CCTGAGAAGAAAGAATACCAAACGATTAATATAGTAGGGATATTTTGTAA
GGAATGCCATATGTGGCATCGAGAAGGGCCGTGCGAGAAGAGTAAGGGTG
TTCCATTCAGACTCGCATGCAATGAGAATTGTGGGAAAAGAGTTTGGTGT
GGTGGGTGTGGCGGTAGTGGGTGCAAAAGCTGCTCAGGTCATGGGTGGAT
CAGCTGGTATTGTAGCAATTGTAGCAGCAAGCCTTGTAAAGGGTGTGGCA
GCTCTTCCTGTACCGGATGCAACGGCTTGTCTTGGTCTTGTAGTGGGCAC
GGCAACTGGCACTGTAAAGGTTGCGGCAGCTCTTCTTGCAACGGCCGATC
TTGCGGTGGGTGCAACAACTGGGCGTGTAAAGGGTGCGGCAGCTCATCCT
GTGGCGGGTGCAACGGCTGGTCTTGTAGTGGATACAGTAGCTGGTCTTGT
AAAGGGTGCGGCAGCTCTTCTTGCAGCGGCTGCAACGGCGGGTCATGCAA
GCGGTGCGGTAACTTTTCCTGCAGTGGTTGTAGTGGATGTTCTTGCGGTA
GGTGCACAAGCTGTTCTCTAAGCCGTTGTCACTACGAAGAAAGATCAAGT
TGTATAATAATGTAA
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protein sequence of Tc06v2_p019800.1

>Tc06v2_p019800.1 ID=Tc06v2_p019800.1|Name=Tc06v2_p019800.1|organism=Theobroma cacao|type=polypeptide|length=305bp
MAEATTMVLKVDLQCYRCYKKVKKVLCKFPEIRDQKYDEKANTVTISVVS
RNPESIRSKICDKAGCCIKSIEIKPKDKPGTDKVTKTTEKDKSGKDKTKE
PEKKEYQTINIVGIFCKECHMWHREGPCEKSKGVPFRLACNENCGKRVWC
GGCGGSGCKSCSGHGWISWYCSNCSSKPCKGCGSSSCTGCNGLSWSCSGH
GNWHCKGCGSSSCNGRSCGGCNNWACKGCGSSSCGGCNGWSCSGYSSWSC
KGCGSSSCSGCNGGSCKRCGNFSCSGCSGCSCGRCTSCSLSRCHYEERSS
CIIM*
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