Tc06v2_t019460.1

Overview
NameTc06v2_t019460.1
Unique NameTc06v2_t019460.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1431
Properties
Property NameValue
NoteRNA-binding family protein isoform 1
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productheterogeneous nuclear ribonucleoprotein 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597296
GenbankXM_018123113.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g019460Tc06v2_g019460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p019460.1Tc06v2_p019460.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto351931auto351931Theobroma cacaoexon
exon-auto351932auto351932Theobroma cacaoexon
exon-auto351933auto351933Theobroma cacaoexon
exon-auto351934auto351934Theobroma cacaoexon
exon-auto351935auto351935Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto351936auto351936Theobroma cacaoCDS
CDS-auto351937auto351937Theobroma cacaoCDS
CDS-auto351938auto351938Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t019460.1 ID=Tc06v2_t019460.1|Name=Tc06v2_t019460.1|organism=Theobroma cacao|type=mRNA|length=1431bp
ATGGAAATGGAGCTTGGGAAGCTATTCATTGGTGGGATTTCTTGGGACAC
AAATGAGGACCGTCTTCGAGAGTATTTTCAAGCTTTTGGGGATGTTGTGG
AAGCTGTGATAATGAGGGATCGGGCTACTGGTCGTGCTCGCGGATTCGGG
TTTGTTGTTTTTGCTGACCCGGCTATTGCAGAAAGAGTTGTTATGGAAAA
GCACATGATAGATGGTAGAACTGTTGAGGCAAAGAAGGCAGTTCCTAGGG
ATGACCAGAACATACTAAACAAGAGCAATGTTAGCATTCATGGATCACCT
GGTCCTGCTCGCACAAAAAAGATATTTGTAGGAGGCTTAGCATCCACAGT
CACTGAGAGTGACTTTAAGAGGTACTTTGATCAGTTTGGTACAATTACAG
ATGTTGTTGTGATGTATGATCACAACACTCAGAGGCCACGAGGTTTTGGA
TTCATTACTTATGATTCAGAGGAAGCTGTCGATAAAGTCTTGCAGAGAAC
ATTTCATGAACTCAATGGAAAAATGGTTGAGGTCAAGCGGGCTGTCCCCA
AAGAATCATCTCCGGGGCCAAGTCGGAACCAGTTAGGTGGGTATAACTTT
GGTCTGAGTAGAGTCAATAGCTTCCTTAATGGCTACATGCAGGGTTATAA
TACTAGTTCAGTTGGAGGTTATGGTTTTAGAATGGAAGGTAGATTTAGTC
CAGTTACTGCTGGTCGGAGTGGATTTCCTCCATTGAGTCCTGGTTATGGG
ATGGGACTGAATTTTGAGTCAAATTTGAGTCCAAGCTACGGAGGAAGCTC
AAACCTTGGTTCTAACCTCAGCTATGGACGGGGATTGTACACTTCATTTA
ATGGAAATTCAAACAGGTTTGGTAGCCCCTTTGGATATGGTGGGGGCAGT
GGAGGAAATAGTTCTATCTTAAACTCAGCAGGTCGAAATATGTGGGGAAA
TGGAAGTTTTAACTATGCTACTAACTCCACAACCTCTAGTGCCATTGTGG
GCTCTGGAAGTGGGAATTCAGGAGTGAGTTCTTTTGGCAGCATAGGTGCA
CTTTGGGATTCCTCTCCTAGTTTAGGTCAAGGTGGAGGTGCTGCTTCTGC
TTATAATGGTGGCAATCTTAGATATGGAAGTGGAGATTTTGGTGTTGGAT
CAGGAGGGATAGGCTATGGAAGAAACAGCAATGTTGCTCAGTTATCAACC
CATGGTGCTTCAAATGGTGGTTATGACGGGGCTTATGCCAATATTTATGA
AAATGGTTCATTTTATGGGGATTCCACTTGGCGATCTTCACCCTCAGACC
TAGAGCGGTCTAGTTCTTTTGGTTTTGGGCTGGGAGATGCAAGTTCAGAT
GTTATGACTAATAACTCTGCTGATTACATTGGTGGTTATAGTGTTACCAA
TAGGCAGGCAAATAGAGGGATTGCTGCATAG
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protein sequence of Tc06v2_p019460.1

>Tc06v2_p019460.1 ID=Tc06v2_p019460.1|Name=Tc06v2_p019460.1|organism=Theobroma cacao|type=polypeptide|length=477bp
MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFG
FVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSP
GPARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFG
FITYDSEEAVDKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNF
GLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYG
MGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGSPFGYGGGS
GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGA
LWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRNSNVAQLST
HGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD
VMTNNSADYIGGYSVTNRQANRGIAA*
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