Tc06v2_t018750.3

Overview
NameTc06v2_t018750.3
Unique NameTc06v2_t018750.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1629
Properties
Property NameValue
NoteMalonyl-CoA decarboxylase family protein isoform 1
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productmalonyl-CoA decarboxylase, mitochondrial, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597215
GenbankXM_018123626.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g018750Tc06v2_g018750Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p018750.3Tc06v2_p018750.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto350524auto350524Theobroma cacaoexon
exon-auto350525auto350525Theobroma cacaoexon
exon-auto350526auto350526Theobroma cacaoexon
exon-auto350527auto350527Theobroma cacaoexon
exon-auto350528auto350528Theobroma cacaoexon
exon-auto350529auto350529Theobroma cacaoexon
exon-auto350530auto350530Theobroma cacaoexon
exon-auto350531auto350531Theobroma cacaoexon
exon-auto350532auto350532Theobroma cacaoexon
exon-auto350533auto350533Theobroma cacaoexon
exon-auto350534auto350534Theobroma cacaoexon
exon-auto350535auto350535Theobroma cacaoexon
exon-auto350536auto350536Theobroma cacaoexon
exon-auto350537auto350537Theobroma cacaoexon
exon-auto350538auto350538Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto350539auto350539Theobroma cacaoCDS
CDS-auto350540auto350540Theobroma cacaoCDS
CDS-auto350541auto350541Theobroma cacaoCDS
CDS-auto350542auto350542Theobroma cacaoCDS
CDS-auto350543auto350543Theobroma cacaoCDS
CDS-auto350544auto350544Theobroma cacaoCDS
CDS-auto350545auto350545Theobroma cacaoCDS
CDS-auto350546auto350546Theobroma cacaoCDS
CDS-auto350547auto350547Theobroma cacaoCDS
CDS-auto350548auto350548Theobroma cacaoCDS
CDS-auto350549auto350549Theobroma cacaoCDS
CDS-auto350550auto350550Theobroma cacaoCDS
CDS-auto350551auto350551Theobroma cacaoCDS
CDS-auto350552auto350552Theobroma cacaoCDS
CDS-auto350553auto350553Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t018750.3 ID=Tc06v2_t018750.3|Name=Tc06v2_t018750.3|organism=Theobroma cacao|type=mRNA|length=1629bp
ATGAAAAAGAAAGCCTTGGCCATTTTGATGCGAGCCAGAATGAGACCCAA
CGATCCAAGCAAGCTTGCTCTTTCTCCTCTATCTAATGAGGTTAATCAAA
TGCTATCCAATTCTCAAGGAAACCAAGCACCGCATGCTACTGAAGATGGA
AATGAAAAACTCAATAAGCAAAGGTCGTTCGAGGTTGTACGAGATTCGAT
GCACTCAGCTATATCAATGAATAAAACAGAAGTTCTTGATGCTGTACTTA
ATGATTTTTCTGAGGGCTATTTTAGCCTTTCTTTTGAGAACCGCCGCAAA
TTATTGCTGACGCTTGCCAAAGAGTATGATCTAAACAGGACTCAAGTTCG
TGAACTTATAAAACAGTATCTTGGACTTCAGCTACCTGGTGTTTCAGGGA
ATGAAGCTCAATCGGGAGGGGTTGAAGATGAAGGCTTTCTTTCAACTTTC
TATCGCATAGAGAGAAATTTGAGACATTCTCTTAAGCCAGTGTATGAAGT
TCTCTTTGAGCGACTCAACACGCACCCTGGAGGGCTGAAGGTTTTGACCA
TCCTTCGGGCTGATATATTATCTATTCTCGCAGAAGAAAATATTTCCTCA
TTGCGAGCATTAGATTCCTATCTGAAGGAGAAGCTTAGTACTTGGCTTAG
TCCTGCTGCTTTAGAGCTCCATCAGATTACATGGGATGATCCTGCTTCTT
TGCTGGAGAAAATTGTGGCTTATGAGGCAGTGCATCCAATCAGCAACCTT
ATTGATCTTAAGAGAAGGCTGGGAGTTGGTCGTCGTTGTTTTGGATATTT
TCATTCAGCCATACCTGGTGAACCCCTTATTTTTATTGAAGTTGCACTTT
TGAAGGCTGTAGCACAGACAATACAGGAAGTTTTGTGGGATCACCCTCCC
ATTCTTGAAAGTGAGGCAACATGTGCATTATTTTACTCCATATCATCAAC
TCAGCCTGGCTTGGCAGGAATCAACCTTGGAAAGTTTCTTATTAAAAGGG
TTATTACATTGGTGAAAAGAGATATGCCACATATTTCTGTGTTCGCTACG
CTTAGTCCTATCCCTGGATTCATGCAGTGGCTTTTGTCCAAGTTGGCATC
TCAATCGAAACTTGGTGAAGCAGAGGACATATCATGTTCATCAGCTGATA
GATCTGGATTAACTTTCTATGAGAATTTACTTGAACCAGAAGAAGAAAGA
GGACTCATAGAATCATCTGGGGATTTTGCTGCTGGAAAAAATGGCATGGA
AATAATGTTAAACTTGCTGACACCTACAAGTCATGATTGGACTAATTCCT
CGAAATTGCTTTCAGCATTTAAACCAGCTTTAATGCGGCTATGTGCAAGG
TACCTTCTGCAAGAGAAAAAGAGAGGAAAAGCTCTAGATTCTGTTGCAAA
CTTCCATCTGCAGAATGGAGCGATGGTTCAAAGAATAAACTGGATGGCTG
ACCGATCCGAAAAAGGCCTACGCCAAAGTGCAGGTATCATGGTAAACTAT
GTCTACAGGCCAGAGACTATTGAAGAATATGCTCACTCATACTTCAGCTC
AGGCCACATCCATTGTTCCTCTGATGTAAGACGATATGTTCAGGTATTTA
AGAAAAGCATTCAAGAATACGAACTTTAG
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protein sequence of Tc06v2_p018750.3

>Tc06v2_p018750.3 ID=Tc06v2_p018750.3|Name=Tc06v2_p018750.3|organism=Theobroma cacao|type=polypeptide|length=543bp
MKKKALAILMRARMRPNDPSKLALSPLSNEVNQMLSNSQGNQAPHATEDG
NEKLNKQRSFEVVRDSMHSAISMNKTEVLDAVLNDFSEGYFSLSFENRRK
LLLTLAKEYDLNRTQVRELIKQYLGLQLPGVSGNEAQSGGVEDEGFLSTF
YRIERNLRHSLKPVYEVLFERLNTHPGGLKVLTILRADILSILAEENISS
LRALDSYLKEKLSTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNL
IDLKRRLGVGRRCFGYFHSAIPGEPLIFIEVALLKAVAQTIQEVLWDHPP
ILESEATCALFYSISSTQPGLAGINLGKFLIKRVITLVKRDMPHISVFAT
LSPIPGFMQWLLSKLASQSKLGEAEDISCSSADRSGLTFYENLLEPEEER
GLIESSGDFAAGKNGMEIMLNLLTPTSHDWTNSSKLLSAFKPALMRLCAR
YLLQEKKRGKALDSVANFHLQNGAMVQRINWMADRSEKGLRQSAGIMVNY
VYRPETIEEYAHSYFSSGHIHCSSDVRRYVQVFKKSIQEYEL*
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