Tc06v2_t018420.1

Overview
NameTc06v2_t018420.1
Unique NameTc06v2_t018420.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1407
Properties
Property NameValue
NoteDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2,mitochondrial
Model evidenceSupporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productdihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597180
GenbankXM_018123942.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g018420Tc06v2_g018420Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p018420.1Tc06v2_p018420.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto349835auto349835Theobroma cacaoexon
exon-auto349836auto349836Theobroma cacaoexon
exon-auto349837auto349837Theobroma cacaoexon
exon-auto349838auto349838Theobroma cacaoexon
exon-auto349839auto349839Theobroma cacaoexon
exon-auto349840auto349840Theobroma cacaoexon
exon-auto349841auto349841Theobroma cacaoexon
exon-auto349842auto349842Theobroma cacaoexon
exon-auto349843auto349843Theobroma cacaoexon
exon-auto349844auto349844Theobroma cacaoexon
exon-auto349845auto349845Theobroma cacaoexon
exon-auto349846auto349846Theobroma cacaoexon
exon-auto349847auto349847Theobroma cacaoexon
exon-auto349848auto349848Theobroma cacaoexon
exon-auto349849auto349849Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto349850auto349850Theobroma cacaoCDS
CDS-auto349851auto349851Theobroma cacaoCDS
CDS-auto349852auto349852Theobroma cacaoCDS
CDS-auto349853auto349853Theobroma cacaoCDS
CDS-auto349854auto349854Theobroma cacaoCDS
CDS-auto349855auto349855Theobroma cacaoCDS
CDS-auto349856auto349856Theobroma cacaoCDS
CDS-auto349857auto349857Theobroma cacaoCDS
CDS-auto349858auto349858Theobroma cacaoCDS
CDS-auto349859auto349859Theobroma cacaoCDS
CDS-auto349860auto349860Theobroma cacaoCDS
CDS-auto349861auto349861Theobroma cacaoCDS
CDS-auto349862auto349862Theobroma cacaoCDS
CDS-auto349863auto349863Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t018420.1 ID=Tc06v2_t018420.1|Name=Tc06v2_t018420.1|organism=Theobroma cacao|type=mRNA|length=1407bp
ATGTGGGCAGTTCTAAGGCGGAGGGTTTTAGCCCAGTCATTTCGGGATGC
TCGATCTTCACGATGTTACATTTCTACTCCAATTGAGACTTTAGTCTCCA
GAGGAGGATCACGGATTGCAGGGATTGTTGGTCACCTGGGTTATCAAGTG
GTTACAGGGTTTCCAATTGGCTCGAAGCCCCTAAGGGAAGTTATTTCACT
TGTTCGAAAATATCCTCCAGTATCGGTCCATGCTAGGTTGTTTTCTGCTG
ATACTGGTGAACTTGTTGATGCTGTTGTTCCTTTCATGGGGGAATCCGTC
ACTGATGGCACTCTAGCAAATTTTTTGAAGCAACCTGGTGACCATGTAGA
ACTAGATGAGCCAATCGCACAAATAGAAACTGATAAGGTGACAATTGAAG
TAAATAGTCCTGAAGCTGGTGTAATTGAACAGTTGGTGGCCAAAGTAGGT
GATACTGTGGAGCCAGGTACCAAGATAGCTGTCATTTCAAAATCTGGTGG
TGTAACTCATGTTGCTCCATCAGAAGAAAAGCCTAGCAAGGCAGTCTCTG
AGCTCTCTACTGCAAGAACAAAGAAAGTGGACATGGAGAAGCCTAAAGCA
GAAACTCCTCCGCCTAAATCAGAAACTCCACCCATCAAAGAAAAGCCTAA
AGCACCTTCTCTGCCTCCCTCCAAACCTTCTGCTAAGGAACCTCAACTTC
CTCCTAAAGAAAGGGAGAGAAGAGTTCCTATGACAAGACTTAGAAAGCGT
GTTGCAACACGTTTGAAGGACTCTCAAAACACTTTCGCGATGTTGACTAC
ATTCAACGAAGTTGATATGACCAATTTGATGAAGCTCCGTTCTGACTATA
AGGATGCTTTTGTTGAGCAGCATGGAGTAAAGTTAGGTCTTATGTCAGGA
TTCGTAAAGGCTGCTGTTAGTGCGCTTCAGAATCAACCAATTATCAATGC
TGTAATTGATGGAGATGACATAATTTATAGAGATTATATTGACATCAGTA
TTGCTGTTGGTACTCCAAAGGGCCTTGTAGTTCCAGTAATCCGAAATGCT
GATAGAATGAACTTTGCCGAAATTGAGAAGGAGATAAACATCCTTGCTAA
GAAGGCAAATGATGGGTCTATATCAATTGATGAAATGGCTGGAGGCTCAT
TCACAATATCTAATGGTGGTGTTTATGGAAGCCTCTTAAGTACTCCAATT
ATTAACCCCCCTCAGTCGGCTATCCTGGGCATGCACTCCTTAGTTAGCCG
CCCAATGGCTGTTGGTGGAGAAATAGTTCCAAGGCCTATGATGTACATTG
CTCTGACATATGACCACCGACTGATTGACGGAAGAGAGGCGGTGTTCTTC
CTGCGTCGCATTAAAGATGTTGTGGAGGATCCACGGAGACTGCTGCTTGA
TATATGA
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protein sequence of Tc06v2_p018420.1

>Tc06v2_p018420.1 ID=Tc06v2_p018420.1|Name=Tc06v2_p018420.1|organism=Theobroma cacao|type=polypeptide|length=469bp
MWAVLRRRVLAQSFRDARSSRCYISTPIETLVSRGGSRIAGIVGHLGYQV
VTGFPIGSKPLREVISLVRKYPPVSVHARLFSADTGELVDAVVPFMGESV
TDGTLANFLKQPGDHVELDEPIAQIETDKVTIEVNSPEAGVIEQLVAKVG
DTVEPGTKIAVISKSGGVTHVAPSEEKPSKAVSELSTARTKKVDMEKPKA
ETPPPKSETPPIKEKPKAPSLPPSKPSAKEPQLPPKERERRVPMTRLRKR
VATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEQHGVKLGLMSG
FVKAAVSALQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNA
DRMNFAEIEKEINILAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPI
INPPQSAILGMHSLVSRPMAVGGEIVPRPMMYIALTYDHRLIDGREAVFF
LRRIKDVVEDPRRLLLDI*
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