Tc06v2_t018300.1

Overview
NameTc06v2_t018300.1
Unique NameTc06v2_t018300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1191
Properties
Property NameValue
NoteArogenate dehydratase/prephenate dehydratase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productarogenate dehydratase/prephenate dehydratase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597166
GenbankXM_018123497.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g018300Tc06v2_g018300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p018300.1Tc06v2_p018300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto349621auto349621Theobroma cacaoexon
exon-auto349622auto349622Theobroma cacaoexon
exon-auto349623auto349623Theobroma cacaoexon
exon-auto349624auto349624Theobroma cacaoexon
exon-auto349625auto349625Theobroma cacaoexon
exon-auto349626auto349626Theobroma cacaoexon
exon-auto349627auto349627Theobroma cacaoexon
exon-auto349628auto349628Theobroma cacaoexon
exon-auto349629auto349629Theobroma cacaoexon
exon-auto349630auto349630Theobroma cacaoexon
exon-auto349631auto349631Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto349632auto349632Theobroma cacaoCDS
CDS-auto349633auto349633Theobroma cacaoCDS
CDS-auto349634auto349634Theobroma cacaoCDS
CDS-auto349635auto349635Theobroma cacaoCDS
CDS-auto349636auto349636Theobroma cacaoCDS
CDS-auto349637auto349637Theobroma cacaoCDS
CDS-auto349638auto349638Theobroma cacaoCDS
CDS-auto349639auto349639Theobroma cacaoCDS
CDS-auto349640auto349640Theobroma cacaoCDS
CDS-auto349641auto349641Theobroma cacaoCDS
CDS-auto349642auto349642Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t018300.1 ID=Tc06v2_t018300.1|Name=Tc06v2_t018300.1|organism=Theobroma cacao|type=mRNA|length=1191bp
ATGGCTATTAAGTGTGCTCCAAACTGGGTTTGTTCTCAAATGCCTCACTC
TCATCTGGGGACAGCAGATTTGGGGTCTACCCGAGGTAGGATTGTGTTGG
AGGTGAGGCCTCCCAAATGGAAATGCTGTGCTTTGGGTTCTTCCGCACCT
AGAGCTACCTCTGCTATTGAAGGTAAGCCTTACGGTACTGAAGTCGAGAC
ATTTCAGACTGGGAAAACTGATCAAGTTCAGGACACTGAGTCCAAGGTGT
TTCACGAGGACTTGAGTCTTCTTCCTAAACCCCTGTCCGCAACAGGTCTA
TCAACATGTGATGATGATGATGGTTCAAATATGCGGGTTGCTTATAAGGG
AATGCAAGGTGCATATGGTGAGGCTGCTGCCCTTAAAGCATACCCTAATT
GTGAAACTGTACCCTGTGAGAAATATGAAAAGGCATTCAAGGCAGTTGAA
CTTTGGTTAGTGGAAAAAGCAGTTCTCCCCATCGAGAATTCTATAGGTGG
TAGCATCCACCGTAATTATGACTTACTCCTCCGGCATAGGTTACACATAG
TAAGGGAGGTGCAGTTGGCTGTTAATCACTGCCTCTTGGCATTGCCTGGT
GTCAGAATGGAGGAAATGGATCGTGTTTTAGGCCATCCCGAGGCATTTGC
TCAATGTGAGATGACACTTAGCAACATGGGCTTTATTAGAGTTAATTCTG
ATGATTGTGCCTCAGCTGCTCAGATTGCTGTCTTAACTGGTGCAAGGAAT
GTTGGCGCAATAGCAAGTGCTCGAGCAGCAGAAATTTATGGGCTTCACAT
TCTTGCTAGAAAAGTCCAGGACGAGGAGCATAACATTACCAGGTATTTGG
TACTTGCAAGAGAACCCATAATTCCAAAAACTGACAAGCCTTATAAGACG
AGCATTGTTTTTAGTCTAGAAGAAGGTCCTGGCATGCTGTTCAAAGCTTT
GGCTGTGTTTACTCTAAGGGGTATAAATTTGTCAAAGATGGAGAGTCGAC
CACTAAAAATGCATCCTCTGAGAGTTGATGATTCTGACAAAGGGACTGCC
AAGTGCTTCGACTATCTTTTCTATATTGACTTTGAAGCTTCTATGGCAGA
ACAGTGTGCCCAAAATGCATTGGCAAATTTAGAGGAATATGCAACATTTC
TCCGCGTCCTTGGTTCCTATCCGATGGATACAACTGTCTAG
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protein sequence of Tc06v2_p018300.1

>Tc06v2_p018300.1 ID=Tc06v2_p018300.1|Name=Tc06v2_p018300.1|organism=Theobroma cacao|type=polypeptide|length=397bp
MAIKCAPNWVCSQMPHSHLGTADLGSTRGRIVLEVRPPKWKCCALGSSAP
RATSAIEGKPYGTEVETFQTGKTDQVQDTESKVFHEDLSLLPKPLSATGL
STCDDDDGSNMRVAYKGMQGAYGEAAALKAYPNCETVPCEKYEKAFKAVE
LWLVEKAVLPIENSIGGSIHRNYDLLLRHRLHIVREVQLAVNHCLLALPG
VRMEEMDRVLGHPEAFAQCEMTLSNMGFIRVNSDDCASAAQIAVLTGARN
VGAIASARAAEIYGLHILARKVQDEEHNITRYLVLAREPIIPKTDKPYKT
SIVFSLEEGPGMLFKALAVFTLRGINLSKMESRPLKMHPLRVDDSDKGTA
KCFDYLFYIDFEASMAEQCAQNALANLEEYATFLRVLGSYPMDTTV*
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