Tc06v2_t017800.6

Overview
NameTc06v2_t017800.6
Unique NameTc06v2_t017800.6
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1284
Properties
Property NameValue
NoteBeta-glucosidase 47
Model evidenceSupporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productbeta-glucosidase 47, transcript variant X5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597114
GenbankXM_007025953.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g017800Tc06v2_g017800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p017800.6Tc06v2_p017800.6Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto348520auto348520Theobroma cacaoexon
exon-auto348521auto348521Theobroma cacaoexon
exon-auto348522auto348522Theobroma cacaoexon
exon-auto348523auto348523Theobroma cacaoexon
exon-auto348524auto348524Theobroma cacaoexon
exon-auto348525auto348525Theobroma cacaoexon
exon-auto348526auto348526Theobroma cacaoexon
exon-auto348527auto348527Theobroma cacaoexon
exon-auto348528auto348528Theobroma cacaoexon
exon-auto348529auto348529Theobroma cacaoexon
exon-auto348530auto348530Theobroma cacaoexon
exon-auto348531auto348531Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto348532auto348532Theobroma cacaoCDS
CDS-auto348533auto348533Theobroma cacaoCDS
CDS-auto348534auto348534Theobroma cacaoCDS
CDS-auto348535auto348535Theobroma cacaoCDS
CDS-auto348536auto348536Theobroma cacaoCDS
CDS-auto348537auto348537Theobroma cacaoCDS
CDS-auto348538auto348538Theobroma cacaoCDS
CDS-auto348539auto348539Theobroma cacaoCDS
CDS-auto348540auto348540Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t017800.6 ID=Tc06v2_t017800.6|Name=Tc06v2_t017800.6|organism=Theobroma cacao|type=mRNA|length=1284bp
ATGATGATGAAACAGGAAGATTTGAATCTCATGAATTACATTGGGGTCAA
TAGCTACCGCTTCTCCATTTCATGGGCAAGAATCCTACCGAAGGGAAGAT
TTGGAAGTGTTAACAAGGCTGGCATCAATCACTATAACAAACTCATTAAC
AGTCTTCTGGTTAGAGGAATCAAACCCTTTGTGACTTTGACTCATTACGA
CATTCCTCAAGAACTTGAAAACAGATATGGGGCATGGCTAAGTCCCCAAG
TGCAGGAAGATTTCAAGTATTATGCAGATATATGTTTCAAACATTTTGGA
GATAGAGTGAAGTACTGGGTAACCTTCAATGAACCTAACGTTGCAGTAAT
CCGTGGTTATAGATCAGGACTTTACCCACCTTCTCGTTGTTCAAGCTCGT
TTGGGAATTGTAGCAGTGGCGATTCTGAGAATGAGCCTTTTGTTGCAGCC
CACAACATCATCTTGTCCCATGCTGCTGCCGTTGATATTTACAGAACCAA
ATACCAGAAACAACAAAGAGGTAGCATTGGCATTGTTATGAATGCCATCT
GGTATGAACCTATCAGCAACTCCTTCGAAGACAAACAGGCAGCTGAGAGA
GCTCAATCTTTCTACATGAACTGGTTCTTAGATCCAATCATATTAGGGAA
ATATCCTCTAGAAATGCAGGAAATTCTGGGGTCCGATTTGCCTGTATTTT
CAAATCATGATCAGAAGAAGCTGAAGAGTGGACTGGATTTTATTGGTGTT
AATCACTATACCTCTTTCTACATTAGAGACTGCATGTTTTCTGTGTGCGA
ACAAGGACCCGGAAGTTCTAAGACAGAAGGCTTTGCCTTAAGAACCGCAC
TTAAGGATGGGATCTTCATAGGTAAATCGACTGCAGTTGACTGGCTTTAT
GTTTATCCTCAAGGAATGGATAAGATAGTAACATACATAAAAGAGAGGTA
CAACAGCATACCAATGTTCATTACAGAAAATGGGTTTGGTGAGAACGACA
AGTCGGATAGCCCAACTGAAGAGTCACTCAATGATGTCAATAGAGTGGAA
TACATAAGTGGCTACTTGGACACCCTGGCAGCAGCTTTGAGGAAAGGAGC
AGATGTTCGAGGCTACTTTCTCTGGTCCTTGCTAGACAATTTCGAATGGA
CATCAGGATATACAATTAGGTTTGGCCTTCACCATGTTGACTATGCCACA
CTCGAGAGAACTCCTAGAGCTTCAGCAATTTGGTACAAACAGTTCATTGC
CAACCATACAAGCCCACAGGAGTTTAGTGCCTAA
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protein sequence of Tc06v2_p017800.6

>Tc06v2_p017800.6 ID=Tc06v2_p017800.6|Name=Tc06v2_p017800.6|organism=Theobroma cacao|type=polypeptide|length=428bp
MMMKQEDLNLMNYIGVNSYRFSISWARILPKGRFGSVNKAGINHYNKLIN
SLLVRGIKPFVTLTHYDIPQELENRYGAWLSPQVQEDFKYYADICFKHFG
DRVKYWVTFNEPNVAVIRGYRSGLYPPSRCSSSFGNCSSGDSENEPFVAA
HNIILSHAAAVDIYRTKYQKQQRGSIGIVMNAIWYEPISNSFEDKQAAER
AQSFYMNWFLDPIILGKYPLEMQEILGSDLPVFSNHDQKKLKSGLDFIGV
NHYTSFYIRDCMFSVCEQGPGSSKTEGFALRTALKDGIFIGKSTAVDWLY
VYPQGMDKIVTYIKERYNSIPMFITENGFGENDKSDSPTEESLNDVNRVE
YISGYLDTLAAALRKGADVRGYFLWSLLDNFEWTSGYTIRFGLHHVDYAT
LERTPRASAIWYKQFIANHTSPQEFSA*
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