Tc06v2_t017800.3

Overview
NameTc06v2_t017800.3
Unique NameTc06v2_t017800.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1443
Properties
Property NameValue
NoteBeta-glucosidase 47
Productbeta-glucosidase 47, transcript variant X4
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597114
GenbankXM_018123085.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g017800Tc06v2_g017800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p017800.3Tc06v2_p017800.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto348443auto348443Theobroma cacaoexon
exon-auto348444auto348444Theobroma cacaoexon
exon-auto348445auto348445Theobroma cacaoexon
exon-auto348446auto348446Theobroma cacaoexon
exon-auto348447auto348447Theobroma cacaoexon
exon-auto348448auto348448Theobroma cacaoexon
exon-auto348449auto348449Theobroma cacaoexon
exon-auto348450auto348450Theobroma cacaoexon
exon-auto348451auto348451Theobroma cacaoexon
exon-auto348452auto348452Theobroma cacaoexon
exon-auto348453auto348453Theobroma cacaoexon
exon-auto348454auto348454Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto348455auto348455Theobroma cacaoCDS
CDS-auto348456auto348456Theobroma cacaoCDS
CDS-auto348457auto348457Theobroma cacaoCDS
CDS-auto348458auto348458Theobroma cacaoCDS
CDS-auto348459auto348459Theobroma cacaoCDS
CDS-auto348460auto348460Theobroma cacaoCDS
CDS-auto348461auto348461Theobroma cacaoCDS
CDS-auto348462auto348462Theobroma cacaoCDS
CDS-auto348463auto348463Theobroma cacaoCDS
CDS-auto348464auto348464Theobroma cacaoCDS
CDS-auto348465auto348465Theobroma cacaoCDS
CDS-auto348466auto348466Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t017800.3 ID=Tc06v2_t017800.3|Name=Tc06v2_t017800.3|organism=Theobroma cacao|type=mRNA|length=1443bp
ATGAAGCTCTCACATTTATATCATGCTCTCTTTGTGTTAGAGATGTGTTT
CTCACTTATAATGGTGTTATGTAATCCAGTGTCTCTAAAGGAAAACCTGG
ATTCATCTCCATTCCCCAGTAGTTTCCTCTTCGGAACAGCCTCTTCATCT
TATCAGTTTGAAGGAGCTTACTTGAGTGATGGCAAAGGCCTGAACAATTG
GGACCTGTTTACTCATAAGCCTGGAAATATTATGGATGGAAGTAATGGAG
ATGTTGCTGTTGATCATTACCATCGATACCTGGAAGATTTGAATCTCATG
AATTACATTGGGGTCAATAGCTACCGCTTCTCCATTTCATGGGCAAGAAT
CCTACCGAAGGGAAGATTTGGAAGTGTTAACAAGGCTGGCATCAATCACT
ATAACAAACTCATTAACAGTCTTCTGGTTAGAGGAATCAAACCCTTTGTG
ACTTTGACTCATTACGACATTCCTCAAGAACTTGAAAACAGATATGGGGC
ATGGCTAAGTCCCCAAGTGCAATCAGGACTTTACCCACCTTCTCGTTGTT
CAAGCTCGTTTGGGAATTGTAGCAGTGGCGATTCTGAGAATGAGCCTTTT
GTTGCAGCCCACAACATCATCTTGTCCCATGCTGCTGCCGTTGATATTTA
CAGAACCAAATACCAGAAACAACAAAGAGGTAGCATTGGCATTGTTATGA
ATGCCATCTGGTATGAACCTATCAGCAACTCCTTCGAAGACAAACAGGCA
GCTGAGAGAGCTCAATCTTTCTACATGAACTGGTTCTTAGATCCAATCAT
ATTAGGGAAATATCCTCTAGAAATGCAGGAAATTCTGGGGTCCGATTTGC
CTGTATTTTCAAATCATGATCAGAAGAAGCTGAAGAGTGGACTGGATTTT
ATTGGTGTTAATCACTATACCTCTTTCTACATTAGAGACTGCATGTTTTC
TGTGTGCGAACAAGGACCCGGAAGTTCTAAGACAGAAGGCTTTGCCTTAA
GAACCGCACTTAAGGATGGGATCTTCATAGGTAAATCGACTGCAGTTGAC
TGGCTTTATGTTTATCCTCAAGGAATGGATAAGATAGTAACATACATAAA
AGAGAGGTACAACAGCATACCAATGTTCATTACAGAAAATGGGTTTGGTG
AGAACGACAAGTCGGATAGCCCAACTGAAGAGTCACTCAATGATGTCAAT
AGAGTGGAATACATAAGTGGCTACTTGGACACCCTGGCAGCAGCTTTGAG
GAAAGGAGCAGATGTTCGAGGCTACTTTCTCTGGTCCTTGCTAGACAATT
TCGAATGGACATCAGGATATACAATTAGGTTTGGCCTTCACCATGTTGAC
TATGCCACACTCGAGAGAACTCCTAGAGCTTCAGCAATTTGGTACAAACA
GTTCATTGCCAACCATACAAGCCCACAGGAGTTTAGTGCCTAA
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protein sequence of Tc06v2_p017800.3

>Tc06v2_p017800.3 ID=Tc06v2_p017800.3|Name=Tc06v2_p017800.3|organism=Theobroma cacao|type=polypeptide|length=481bp
MKLSHLYHALFVLEMCFSLIMVLCNPVSLKENLDSSPFPSSFLFGTASSS
YQFEGAYLSDGKGLNNWDLFTHKPGNIMDGSNGDVAVDHYHRYLEDLNLM
NYIGVNSYRFSISWARILPKGRFGSVNKAGINHYNKLINSLLVRGIKPFV
TLTHYDIPQELENRYGAWLSPQVQSGLYPPSRCSSSFGNCSSGDSENEPF
VAAHNIILSHAAAVDIYRTKYQKQQRGSIGIVMNAIWYEPISNSFEDKQA
AERAQSFYMNWFLDPIILGKYPLEMQEILGSDLPVFSNHDQKKLKSGLDF
IGVNHYTSFYIRDCMFSVCEQGPGSSKTEGFALRTALKDGIFIGKSTAVD
WLYVYPQGMDKIVTYIKERYNSIPMFITENGFGENDKSDSPTEESLNDVN
RVEYISGYLDTLAAALRKGADVRGYFLWSLLDNFEWTSGYTIRFGLHHVD
YATLERTPRASAIWYKQFIANHTSPQEFSA*
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