Tc06v2_t016600.1

Overview
NameTc06v2_t016600.1
Unique NameTc06v2_t016600.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1260
Properties
Property NameValue
NotePutative PAP-specific phosphatase, mitochondrial
Model evidenceSupporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productputative PAP-specific phosphatase, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596974
GenbankXM_007025758.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016600Tc06v2_g016600Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016600.1Tc06v2_p016600.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto346215auto346215Theobroma cacaoexon
exon-auto346216auto346216Theobroma cacaoexon
exon-auto346217auto346217Theobroma cacaoexon
exon-auto346218auto346218Theobroma cacaoexon
exon-auto346219auto346219Theobroma cacaoexon
exon-auto346220auto346220Theobroma cacaoexon
exon-auto346221auto346221Theobroma cacaoexon
exon-auto346222auto346222Theobroma cacaoexon
exon-auto346223auto346223Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto346224auto346224Theobroma cacaoCDS
CDS-auto346225auto346225Theobroma cacaoCDS
CDS-auto346226auto346226Theobroma cacaoCDS
CDS-auto346227auto346227Theobroma cacaoCDS
CDS-auto346228auto346228Theobroma cacaoCDS
CDS-auto346229auto346229Theobroma cacaoCDS
CDS-auto346230auto346230Theobroma cacaoCDS
CDS-auto346231auto346231Theobroma cacaoCDS
CDS-auto346232auto346232Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016600.1 ID=Tc06v2_t016600.1|Name=Tc06v2_t016600.1|organism=Theobroma cacao|type=mRNA|length=1260bp
ATGATTCCGGCCACGGATCTTCACCTCCTCCACTCGTCTCCCGGGTTCTC
CGCCGTCCGGTTCTTCCCTTGCCACCGTTCCCGTACGCCTCTCCGCGGAC
GATTCTTCACAGTAAGATCGAGTCTTCCTTTTCCAAATGAGAAGGCCAAG
TATCACAAAGAACTTGAAGCGGCGATGGAGGTCGTCGAGAGAGCCTGTCG
CCTTTGCGTTGACGTGCAAAGGTCTCTTTTTTCTGATGAAGGACGGATTC
TTGAAAAGAATGACCAAACTCCGGTCACAGTGGCAGATTTTGGAGTCCAG
GCTCTTGTTAGTTTAGAGTTGAGTAAATTGTTCCCTTCTATTCCATTGGT
GGTGGAAGAGGACTCTGGTTTTTTACGCTCAAATAATCTGGTGGATCCTG
TAGTAAGTGCAGTATCTGATAAAACGAGCTTTGATGAGGAATCATTGTCA
CGAGCTGATGTGCTGGAAGCAATTGACAGAGGGGGCAAAGATGCTTTTGC
TTTTGGAACAAAACCAGCCACATATTGGATACTGGATCCAATAGATGGCA
CACGAGGGTTTGTAAAAGGAAGTCAGGCCTTATATGTGGTTGGTTTGTCT
CTTGTAGTTGAAGGAGAGATTGTGTTGGGTGCCATGGGCTGCCCTAACTG
GGTTGTAGATACTTCCTACAGGTCCACTGCTGATGTCCAAGGTTATAAAA
ACAGTTCACCTGGACTGGGGATCATTATGGTTGCTCATGTTGGCTGTGGA
ACTTGGACAAAGAGGTTAAAGGATATGCTTGATAGCTCAACTAAAATGTC
ATCTGATTGGACCAGATGCTTTGTTGATGGTTGTTGCTTGGTACCCGAAG
CCCGCTTCTGTATTTCAGATAGTCAGACATGGGAGTCATTGCCTTTATCG
ATCTTGTATGAAGCAAGAATTGATGCTGATGATGATATTCGTGATAAGGA
AATTCGTCTTTTTCCCACATGTTGCGGAAGTTTATGCAAATACTTAATGG
TGGCTTCAGGTCGAGCATCTGTTTTCATTCTTCAAGCAAGATCTCAAAAA
GTTATCAAGGCTTGGGATCATGCTGTTGGTGTGATATGCGTACATGAAGC
TGGAGGAAAGGTGACAGACTGGACAGGAAGTGAACTTGATCTTGCTGCAG
ATCAAGTTGAACGGAGGAACATATACCCTGCGGGTGGGGTGCTTGTGACT
AATAGCAACATCCATGATCAGATACTGGAGATGATATCTTCCAATTCAAC
AGTTGTTTAA
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protein sequence of Tc06v2_p016600.1

>Tc06v2_p016600.1 ID=Tc06v2_p016600.1|Name=Tc06v2_p016600.1|organism=Theobroma cacao|type=polypeptide|length=420bp
MIPATDLHLLHSSPGFSAVRFFPCHRSRTPLRGRFFTVRSSLPFPNEKAK
YHKELEAAMEVVERACRLCVDVQRSLFSDEGRILEKNDQTPVTVADFGVQ
ALVSLELSKLFPSIPLVVEEDSGFLRSNNLVDPVVSAVSDKTSFDEESLS
RADVLEAIDRGGKDAFAFGTKPATYWILDPIDGTRGFVKGSQALYVVGLS
LVVEGEIVLGAMGCPNWVVDTSYRSTADVQGYKNSSPGLGIIMVAHVGCG
TWTKRLKDMLDSSTKMSSDWTRCFVDGCCLVPEARFCISDSQTWESLPLS
ILYEARIDADDDIRDKEIRLFPTCCGSLCKYLMVASGRASVFILQARSQK
VIKAWDHAVGVICVHEAGGKVTDWTGSELDLAADQVERRNIYPAGGVLVT
NSNIHDQILEMISSNSTVV*
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