Tc06v2_t016540.2

Overview
NameTc06v2_t016540.2
Unique NameTc06v2_t016540.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1452
Properties
Property NameValue
NoteTransport inhibitor response 1-like protein Os04g0395600
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productprotein TRANSPORT INHIBITOR RESPONSE 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596963
GenbankXM_018123229.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016540Tc06v2_g016540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016540.2Tc06v2_p016540.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto346158auto346158Theobroma cacaoexon
exon-auto346159auto346159Theobroma cacaoexon
exon-auto346160auto346160Theobroma cacaoexon
exon-auto346161auto346161Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto346162auto346162Theobroma cacaoCDS
CDS-auto346163auto346163Theobroma cacaoCDS
CDS-auto346164auto346164Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016540.2 ID=Tc06v2_t016540.2|Name=Tc06v2_t016540.2|organism=Theobroma cacao|type=mRNA|length=1452bp
ATGCATATCCTTGATGTTATCATTTCCCCAGTATGCCCATTTTCATTGGT
TGAGAGAATTTACATCTTTATCTGTCCTTTAGGAATGATTGAAGAAGAAA
TCTACCTACTCGGTTTCCAAGAGCTAAATGCCTGTAGACATGGAGTAAAC
AGTTGGGAAGTCATAAGAAAATTTCCTCTGGTTCTTGGACTGTGTTTGAT
ATCGAACTTGACTGAGCTCGACATACAGGAGAACGGCATTGATGATAAAG
GAGGTAGTTGGTTGAGCTGCTTCCCTGAAAGCTTCACATCATTGGAAGCA
CTGAACTTTGCCAACTTGACCAGTGATATTAATTTCGATGCTCTTGAGAG
GCTTGTAGGTAGGTGCAAGGCAATGAGGGTTTTAAAGGTCAACAGGAGCA
TATCCTTGGAACAATTACAAAGACTTCTTGTTAATGCTCCTCAATTGGCC
GAGCTTGGTACGGGCTCATTCTCACAAGAACTTACTTTCCGCCAATATGA
AGAGCTTGAAAGCACGTTAGGTAGTTGCAAGAATATACATGCACTATCGG
GTTTGTGGGAGGCCAAGGGCTTATATCTCCCTGCTTTATATTCTCTGTGC
ACACATCTGACTTTCTTGAACTTGAGCTATGCTCCTTTGCAAAGTGGTGA
ACTCGCTAAGCTTCTTACTCACTGTCCACAACTACGACGCCTTTGGGTCT
TAGACACAGTAGAAGACAAAGGACTGGAGGCCGTTGGATTGAACTGCCCG
TTGCTTGAGGAACTTCGAGTTTTCCCTGCTGATCCCTTTGATGAGGATAT
TATCCATGGAGTCACTGAAGCTGGGTTTGTTGCTGTGTCTCATGGTTGCC
CAAGACTCCACTATGTCCTCTATTTTTGTCGGCAGATGACTAATGCAGCT
GTAGCAACCATTGTACAGAACTGCCCTGATTTTACGCATTTTCGTTTATG
CATAATGGACCCAGGTCAACCAGATTATCTCACAAATGAACCTATGGATG
AAGCTTTTGGTGCAGTGGTTAAGACATGCAGTAAACTCCAGAGGCTTTCA
GTTTCAGGTCTCTTAACTGATCTGACATTTGAGTATATTGGTAGCTATGC
TAAGAACTTGGAGACCCTTTCAGTGGCTTTTGCAGGCAGCAGTGACTGGG
GGATGCAGTGTGTTTTGAGAGGTTGTCCAAAACTAAGGAAACTTGAGATA
AGAGACTGCCCATTTGGAAATGCGGCACTGCTTTCAGGTTTGGAGAAGTA
TGAGTCCATGAGGTCACTTTGGATGTCAGCCTGCAATGTGACAATGAATG
CTTGTAGGCTATTGGCGAAGGAGATGCCCAGATTGAATGTTGAGGTAATG
AAGGAGGATGGAAGTGATGGTATTCAAGCAGATAAAGTATATGTTTATCG
TTCTATTGCAGGCCCAAGGAGGGATGCGCCACCATCTGTGCTTACTCTCT
GA
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protein sequence of Tc06v2_p016540.2

>Tc06v2_p016540.2 ID=Tc06v2_p016540.2|Name=Tc06v2_p016540.2|organism=Theobroma cacao|type=polypeptide|length=484bp
MHILDVIISPVCPFSLVERIYIFICPLGMIEEEIYLLGFQELNACRHGVN
SWEVIRKFPLVLGLCLISNLTELDIQENGIDDKGGSWLSCFPESFTSLEA
LNFANLTSDINFDALERLVGRCKAMRVLKVNRSISLEQLQRLLVNAPQLA
ELGTGSFSQELTFRQYEELESTLGSCKNIHALSGLWEAKGLYLPALYSLC
THLTFLNLSYAPLQSGELAKLLTHCPQLRRLWVLDTVEDKGLEAVGLNCP
LLEELRVFPADPFDEDIIHGVTEAGFVAVSHGCPRLHYVLYFCRQMTNAA
VATIVQNCPDFTHFRLCIMDPGQPDYLTNEPMDEAFGAVVKTCSKLQRLS
VSGLLTDLTFEYIGSYAKNLETLSVAFAGSSDWGMQCVLRGCPKLRKLEI
RDCPFGNAALLSGLEKYESMRSLWMSACNVTMNACRLLAKEMPRLNVEVM
KEDGSDGIQADKVYVYRSIAGPRRDAPPSVLTL*
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