Tc06v2_t016430.1

Overview
NameTc06v2_t016430.1
Unique NameTc06v2_t016430.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2217
Properties
Property NameValue
NoteAnaphase-promoting complex subunit 4
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productanaphase-promoting complex subunit 4, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596950
GenbankXM_007025726.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016430Tc06v2_g016430Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016430.1Tc06v2_p016430.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto345896auto345896Theobroma cacaoexon
exon-auto345897auto345897Theobroma cacaoexon
exon-auto345898auto345898Theobroma cacaoexon
exon-auto345899auto345899Theobroma cacaoexon
exon-auto345900auto345900Theobroma cacaoexon
exon-auto345901auto345901Theobroma cacaoexon
exon-auto345902auto345902Theobroma cacaoexon
exon-auto345903auto345903Theobroma cacaoexon
exon-auto345904auto345904Theobroma cacaoexon
exon-auto345905auto345905Theobroma cacaoexon
exon-auto345906auto345906Theobroma cacaoexon
exon-auto345907auto345907Theobroma cacaoexon
exon-auto345908auto345908Theobroma cacaoexon
exon-auto345909auto345909Theobroma cacaoexon
exon-auto345910auto345910Theobroma cacaoexon
exon-auto345911auto345911Theobroma cacaoexon
exon-auto345912auto345912Theobroma cacaoexon
exon-auto345913auto345913Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto345914auto345914Theobroma cacaoCDS
CDS-auto345915auto345915Theobroma cacaoCDS
CDS-auto345916auto345916Theobroma cacaoCDS
CDS-auto345917auto345917Theobroma cacaoCDS
CDS-auto345918auto345918Theobroma cacaoCDS
CDS-auto345919auto345919Theobroma cacaoCDS
CDS-auto345920auto345920Theobroma cacaoCDS
CDS-auto345921auto345921Theobroma cacaoCDS
CDS-auto345922auto345922Theobroma cacaoCDS
CDS-auto345923auto345923Theobroma cacaoCDS
CDS-auto345924auto345924Theobroma cacaoCDS
CDS-auto345925auto345925Theobroma cacaoCDS
CDS-auto345926auto345926Theobroma cacaoCDS
CDS-auto345927auto345927Theobroma cacaoCDS
CDS-auto345928auto345928Theobroma cacaoCDS
CDS-auto345929auto345929Theobroma cacaoCDS
CDS-auto345930auto345930Theobroma cacaoCDS
CDS-auto345931auto345931Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016430.1 ID=Tc06v2_t016430.1|Name=Tc06v2_t016430.1|organism=Theobroma cacao|type=mRNA|length=2217bp
ATGGAAACCGACGAAACGCCACGTGTGCTTCCCTTTCAGCTTCAATTCGA
CAAACCTGTTGCCTCTCAGATTAAAATTGCGGAATGGAATCCAGAGAAAG
ATTTACTGGCTATGGTTACTGAGGACTCCAAGATTTTGCTGCATCGGTTT
AATTGGCAAAGACTCTGGACAATTTCTCCTGGAAGGTGCATTACATCCTT
ATGTTGGCGTCCTGATGGTAAAGCGATAGCGGTTGGGCTTGAGGACGGAA
CGATTTCATTGCATGATGTTGAAAATGGAAAGTTGTTGAGAAGCTTAAAG
TCTCACACTGTTGCTGTTGTGTCCCTAAACTGGGAGGAGGATGGACAAGT
GATTAGAGATGATTCTGTTAACAATTCAAAATATGAGGACCGCACTTCTT
GTTTCTTTCCTCCTGCACCAAGAGTTCCTCGGATGCCTGGACTAGTACCT
GGAGATACTGGCTTCATGGATGATAGTGAAGATTCGTTTCGAGAGCTTTC
AAATTCTTCATACCAACGATTTAACATTTTATGCAGTGGTGACAAAGATG
GAAGCATATGCTTTAGTATATTTGGAATATTTCCAATAGGGAAAATAAAC
ATTCACAAGTTGTCTATTCCTACTTCCTTTGCAAATGAGCAAGCTACTTA
CAGACTTCTAAATGCTTCCATTTCCAAGGTTGCTTTGTCAAAAGACCTTT
GTCATTCGATTGTAATGTGTTCTGGAGAACTTAATCAAGATGAGGTTGAA
TCGCAAGAGGGACAGCTGGGTGTACATGGTATGCGTGGCTTGCATTGCTT
ACTGCTTGATACTTCTATCTTTTGGAAGAGGAAAAATGAACTCCATCAAG
TGGCCCAACAAGCTTCTAACATTGAGGATTTAATTGAAGTTATTCGTACA
TCATTATCAGTAATGTGTAAGCAGTGGTCAGATGCCATGCACACTTTCCG
TGAGAAGTTTGATTCTCTATCTAGTTTAATAATTGATCATGGGCTGGACT
CGTCTCCCCAAGAGGAGTTTCTGAGCCTCCTAGGCGGTGCACGAACTAGT
CCACCAGTCCATCAGTTTCTAGTTAACTCCCTGGGTGAATTGGGAGTGAA
GCGTGTCTCAAAGGTCGTTTGTGGTGCTGGAAAAGAACTTCAGCATGTTG
TCCTTGATCATCTTCAGCCTTCTGCAGAAATTATTGGATTCAGGATGGGA
GAACTAAGAGGTCTATCACGATGGCGCACACGTTTTCGGGGTATTGGCCT
AGATGAGACTCTGATCAATAATGCGACAGAAAAATCTGGAATGTTAATAG
TACAAGTTGAGCGATTTATGAGGGTGCTTTCCTCTGTGGTACAGCAGTTT
TTATATGATCAAGATCCTGTTAGGCCCTTTTTGGAGCTGTCTGAAGTTGA
TATTGAAACTGACATGGAAACACTGCAAAGAGTTAGAGAATTGGTTCATT
TTGGGGGATTTTCAGATTGTGAATATCTGCGGAGGACATTATCAGAGGAA
TTTCAACAGATGGAGTCTAGTTTCAAGGAGGCTTTCTTGATGCCCTTTAC
AACAATATCACAGAAGATACTTTGTAAGGATGTGCTTCCACTGTTTGCTC
TCCCATCTTCACCAGCACCTATGTCTGTCACTGTTCCTATGTCAGTAACA
TTCTACAAGGATGCCTCCACAGCTATGTCATCTTATCAGACTCATGAACA
TGGGTATATTGATTATATTTCTTTCCAAATACCTGGTGACTCTTCCTTGG
ACATTGCTAATTGTATAGGCATATCAAAGGGATTCATGCATAGTTCGAGC
AATATTACTGAGGACTCTGCTTCATTGGAAGCTGTTTTGCTGTCTGTTCC
TGATGGTTATCATTGTGTGGATCTATCTTTATATAAGGAAGGTCAAATTG
TTTTGTTATTAAATGAAACAACTGCTGCTTCTGAAAGCTTTGGAGAATCT
TGTATGATGATCGTCCAGGCTAATGATCTCCCATTTGTATCTATTTCAAG
ATCCAGTTGTATCAATCGTTGGAACTTAAATCAGCTAAAGGACTTTGTTA
TGTATCTACAACTGGAGAATGAGAAGGTTCGAATTATTCCTCACTCTGTA
GTTGCTCCTCTCGCAGTTAGTGCATCCAGAGGCGTAGCTTGTGTTTTCGC
TGCAAGAAAACGTGCCTTGGTCTACATACTGGATGAAGATGAAGATGATA
TCTCAGATACAGAATGA
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protein sequence of Tc06v2_p016430.1

>Tc06v2_p016430.1 ID=Tc06v2_p016430.1|Name=Tc06v2_p016430.1|organism=Theobroma cacao|type=polypeptide|length=739bp
METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKILLHRF
NWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLK
SHTVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVP
GDTGFMDDSEDSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKIN
IHKLSIPTSFANEQATYRLLNASISKVALSKDLCHSIVMCSGELNQDEVE
SQEGQLGVHGMRGLHCLLLDTSIFWKRKNELHQVAQQASNIEDLIEVIRT
SLSVMCKQWSDAMHTFREKFDSLSSLIIDHGLDSSPQEEFLSLLGGARTS
PPVHQFLVNSLGELGVKRVSKVVCGAGKELQHVVLDHLQPSAEIIGFRMG
ELRGLSRWRTRFRGIGLDETLINNATEKSGMLIVQVERFMRVLSSVVQQF
LYDQDPVRPFLELSEVDIETDMETLQRVRELVHFGGFSDCEYLRRTLSEE
FQQMESSFKEAFLMPFTTISQKILCKDVLPLFALPSSPAPMSVTVPMSVT
FYKDASTAMSSYQTHEHGYIDYISFQIPGDSSLDIANCIGISKGFMHSSS
NITEDSASLEAVLLSVPDGYHCVDLSLYKEGQIVLLLNETTAASESFGES
CMMIVQANDLPFVSISRSSCINRWNLNQLKDFVMYLQLENEKVRIIPHSV
VAPLAVSASRGVACVFAARKRALVYILDEDEDDISDTE*
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