Tc06v2_t016320.1

Overview
NameTc06v2_t016320.1
Unique NameTc06v2_t016320.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1449
Properties
Property NameValue
NotePutative Probable ADP-ribosylation factor GTPase-activating protein AGD5
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprobable ADP-ribosylation factor GTPase-activating protein AGD5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596938
GenbankXM_018123242.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016320Tc06v2_g016320Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016320.1Tc06v2_p016320.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto345656auto345656Theobroma cacaoexon
exon-auto345657auto345657Theobroma cacaoexon
exon-auto345658auto345658Theobroma cacaoexon
exon-auto345659auto345659Theobroma cacaoexon
exon-auto345660auto345660Theobroma cacaoexon
exon-auto345661auto345661Theobroma cacaoexon
exon-auto345662auto345662Theobroma cacaoexon
exon-auto345663auto345663Theobroma cacaoexon
exon-auto345664auto345664Theobroma cacaoexon
exon-auto345665auto345665Theobroma cacaoexon
exon-auto345666auto345666Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto345667auto345667Theobroma cacaoCDS
CDS-auto345668auto345668Theobroma cacaoCDS
CDS-auto345669auto345669Theobroma cacaoCDS
CDS-auto345670auto345670Theobroma cacaoCDS
CDS-auto345671auto345671Theobroma cacaoCDS
CDS-auto345672auto345672Theobroma cacaoCDS
CDS-auto345673auto345673Theobroma cacaoCDS
CDS-auto345674auto345674Theobroma cacaoCDS
CDS-auto345675auto345675Theobroma cacaoCDS
CDS-auto345676auto345676Theobroma cacaoCDS
CDS-auto345677auto345677Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016320.1 ID=Tc06v2_t016320.1|Name=Tc06v2_t016320.1|organism=Theobroma cacao|type=mRNA|length=1449bp
ATGAACGAGAAGGCTAACGTTTCTAAACAACTTAACGCTAAACACAGAAA
GATATTGGAGGGCCTTCTTAAGTTACCTGAGAATAGAGAATGCGCAGACT
GCAAAAGCAAGGGACCACGATGGGCTAGTGTAAATCTAGGAATATTCATT
TGCATGCAATGTTCAGGGATTCACAGAAGTCTTGGAGTACACATATCAAA
GGTGAGGTCTGCTACTTTAGATACATGGCTTCCAGAGCAGGTTTCTTTTA
TTCAATCCATGGGGAATGAGAAATCAAATAATTACTGGGAAGCGGAGTTG
CCTCCCAATTATGACAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTA
TGAAGAAAAGAGATGGGTTCCCAGGGGTCGAAAGCCAAAATTACCTTCTA
GTGTGCGTGAAGAGAAGGAATTACTTTATAGACAACCTAGAAGTGGTGGT
TTTAAGTACATGAATAACGTAAATCATGTTTCAGAAGAGAAGAAAGTTAC
TCACCCATCTATTGCGAATAACAGCATTCCTACTCCTAAAAGTTGCTCGC
AAGCGCATGTTAATGTTCCTCAGAAGGTTACACCTGATACAAGATCACAA
GAACCTCTACAGAATTCTGAACCATCAGTCTCAATGGCTGAATCTCCAAA
TGAGGAGGTTAATCCTACTCCATCAGTCTCAGATGCTGAATCAATAAAGC
AGGATGTTAAGACTACTTCATCAGCAGCACCACCCAAAATTGATTATGCC
ACTGAACTTTTCAATCTGCTTTCCATGGGGGATTCTAGAGAAAATGGCTC
AAAGACTTCTGCTCATGATAATTTCTGGGCTGGTTTGTCATCTGCTGAAG
CAAAATCCACCAGGGATGCTAGTGATTCATCAATCTTAAGTCAAACCAAG
GTGCAACATAAATATGGAATTGAGGATCTATTTAGAGATTCAACAACAGT
AAAACAAACTTTTCCAGAGAAACCACAGGAAGATGCTAAACCTGATATTC
AGTATTCGTCAAGTATGGTGTCTCCAACTTCTATCCATCAACAACAGCTT
GCTATGCTTTCCCAACAACAGTCCTTCATGGCTACTGCTGCGAAGCCTAA
TTGTGGATCCCAAGCCTTTCCTGTCAATGCACATCATGGCATGCATTTTC
CTGCTCCAAATTCTGGAAGCATTGGGCATCAATTTCCTAGAGTGGTGATG
CCAGTCGCTGGTCTACAGAAGCATATGCTGGTGGGAAGCAACCAACAGAT
GTACCCAGCAGGAAATTCAGTTAATTTCCCAACTTCCAGCTTGCACACAC
CAGGGCCAGGAGTTCCACCAACCATTGGCATGAAAAGCATTGGAGGTAGG
CCTATCTCAGCATCTCCTGTTCCATCAGTGACCCCAACTCAATGGGGAAA
AGATTATGATTTCTCGTCATTAACGCAAGGGATGTTTACAAAGCAGTAA
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protein sequence of Tc06v2_p016320.1

>Tc06v2_p016320.1 ID=Tc06v2_p016320.1|Name=Tc06v2_p016320.1|organism=Theobroma cacao|type=polypeptide|length=483bp
MNEKANVSKQLNAKHRKILEGLLKLPENRECADCKSKGPRWASVNLGIFI
CMQCSGIHRSLGVHISKVRSATLDTWLPEQVSFIQSMGNEKSNNYWEAEL
PPNYDRVGIENFIRAKYEEKRWVPRGRKPKLPSSVREEKELLYRQPRSGG
FKYMNNVNHVSEEKKVTHPSIANNSIPTPKSCSQAHVNVPQKVTPDTRSQ
EPLQNSEPSVSMAESPNEEVNPTPSVSDAESIKQDVKTTSSAAPPKIDYA
TELFNLLSMGDSRENGSKTSAHDNFWAGLSSAEAKSTRDASDSSILSQTK
VQHKYGIEDLFRDSTTVKQTFPEKPQEDAKPDIQYSSSMVSPTSIHQQQL
AMLSQQQSFMATAAKPNCGSQAFPVNAHHGMHFPAPNSGSIGHQFPRVVM
PVAGLQKHMLVGSNQQMYPAGNSVNFPTSSLHTPGPGVPPTIGMKSIGGR
PISASPVPSVTPTQWGKDYDFSSLTQGMFTKQ*
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