Tc06v2_t016020.1

Overview
NameTc06v2_t016020.1
Unique NameTc06v2_t016020.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2433
Properties
Property NameValue
Note(E,E)-geranyllinalool synthase
Model evidenceSupporting evidence includes similarity to: 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product(E,E)-geranyllinalool synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596905
GenbankXM_018123215.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016020Tc06v2_g016020Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016020.1Tc06v2_p016020.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto344932auto344932Theobroma cacaoexon
exon-auto344933auto344933Theobroma cacaoexon
exon-auto344934auto344934Theobroma cacaoexon
exon-auto344935auto344935Theobroma cacaoexon
exon-auto344936auto344936Theobroma cacaoexon
exon-auto344937auto344937Theobroma cacaoexon
exon-auto344938auto344938Theobroma cacaoexon
exon-auto344939auto344939Theobroma cacaoexon
exon-auto344940auto344940Theobroma cacaoexon
exon-auto344941auto344941Theobroma cacaoexon
exon-auto344942auto344942Theobroma cacaoexon
exon-auto344943auto344943Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto344944auto344944Theobroma cacaoCDS
CDS-auto344945auto344945Theobroma cacaoCDS
CDS-auto344946auto344946Theobroma cacaoCDS
CDS-auto344947auto344947Theobroma cacaoCDS
CDS-auto344948auto344948Theobroma cacaoCDS
CDS-auto344949auto344949Theobroma cacaoCDS
CDS-auto344950auto344950Theobroma cacaoCDS
CDS-auto344951auto344951Theobroma cacaoCDS
CDS-auto344952auto344952Theobroma cacaoCDS
CDS-auto344953auto344953Theobroma cacaoCDS
CDS-auto344954auto344954Theobroma cacaoCDS
CDS-auto344955auto344955Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016020.1 ID=Tc06v2_t016020.1|Name=Tc06v2_t016020.1|organism=Theobroma cacao|type=mRNA|length=2433bp
ATGGAACTCTTGCATGTTTCAATTCAAGCTATAGTTAAAGACGTAAAGGA
AGAGATGTCGTTGGAGATCGATCCTTACTCATTTGTTTCCCCTTCTGCTT
ATGACACTGCTTGGTTGGCAATGATTAATCCTGCTGCAGATTCCAACCAG
CCACTTTCATCACCCATGTTCAAGGCTTGCTTGGATTGGGTGCTGAATAA
CCAGACAGAAGAAGGGTATTGGGGGGAGTGTGACTCCCATGGCAATCCCA
CCATCGAGTCTCTGCCTGCTACTTTGGCTTGTGTAATTGCACTCAAAAAG
TGGAATGTGGGGAATAAAAATATAGAGCGAGGATTGGACTTTGTTCATGG
AAACGCCGAGAAGCACCTTGGAGTAACTCACGACCACTTTCCCCGTTGGT
TTACAATTGTTTTCCCTGGGATGATTGAACTTGCGCTTAAAGCTGGGCTA
GAGCTTGCCTTCCCTTCCCAGTTAAACGAACTGTTGTCAGACATATTCCA
CCAACGGCAAAGGATCCTTGAAACCGAGGAACTTGTTGACAGTCAATATC
CTCCATTGTTATCATATATTGAAGCGCTGCCTTCGTCGTATGATATCAGC
GGAGAAGACATAACCATGAACTTGAGTGGTGATGGCTCACTGTTCCAATC
TCCCGCTGCCACTGCGCGGGCTTTCATGGCTACTGGAAAAGAAGAGTGCT
TAGGTTATCTGGAATCTCTTGTTCGAAGATGTGCTGATGGAGTTCCACCA
ACTTATCCCATGGATGAAGAGCTAATAAAGCTTTGTGTGGTCAATCAACT
ACAAAGATTGGGGTTAGCTGACCATTTCACACATGAGATTGAAGCCAATT
TGGCCCAGCTTTACCGGAATTACAACAGCCAAGAGTCGCAGGCAAAACCA
AGCAGCAATCCAGTTAGTGCAATCCAGCTGCACAAAGACTCTTTAGCGTT
TCGGCTCCTTCGCATGCATGGTTATAGCGTATCACCTTGGCAGTTCTTTT
GGTTCTTGAAAAATCAAGAAGTTCGAGCTCGTATTGAAAAAGATTATGAA
TACTTTTCAAGCGCAATGCTCAACGTTTACAGAGCAACAGATTTTATGTT
TCCAGGAGAGTATGAACTCGAGGAGGCCAGATCATTTTCTCGGAAAGTGA
TAGAGAAAGTATTATCCAAGGGGACTAGAGACAATAAGGACAACTTTAGA
TCTATCAACCTTGAGAAAATGATGGAGCATGAGCTGAGACATCCTTGGAT
CGCTCGACTGGATCATTTGGAACATAGAACCTGGATTGAAGATAGAAACA
GCAACATTTTGTGGGTAGGCAAGGCCTTCTTGCACAGGTTGTCACCCCTT
TTAACTGAGAAGCTAATGCAACTTGCAGTGGCAGATTATGAGTTTCGGCA
GTTTATATACAGGAATGAGTTGGAGGAAGTGAAAAGGTGGTCAAAGAGCA
GGGGTCTCAGCGATATGGGATTTGGTCGAGAGAAAACTACATATTGTTAC
TTTGCCATTGCCTCCAGCATTCCACTACCATATGACTCTGATATACGGGT
GATGATTGCAAAAAGTGCAATTGTGGTAACAGTTGCTGATGATTTTTATG
ATATGGAAGGTTCTTTAGATGAGTTGAATAGCCTCACTGATGCAATCGGA
AGATGGGACGCTAGTGAATTGACTGGCCATAGTAAGACTATCTTTGATGC
CCTTGATGATCTCGTTAGAGAAATTGTAGCAAAAGTTCTCCAACACCAGG
GAACTGATATAACAATTTTTCTGCAGCAGATATGGTATGAAACATTTGCT
TCATGGCTTGTGGAAGCAAAGTGGAGCAGGGGAGGATTTCTTCCATCAAT
TGATGAATACCTTAGAACTGGAATGATATCCATTGCTGCACATACCATAA
TTCTTCCTGCTTCATTTCTATCGAACCCAAGCTTAATAGATTGCAAAGTC
AGGCCAGGTGAATATGAGGCTGTTACCAAATTGCTGATGCTTATACCCCG
TTTATTGAATGACATACAGAGCTATCAGAAGGAACAAGAAGAGGGGAAAA
TGAACTGTGTATTACTCTATTTGAAAGAAAATCCGGGAGCAGACATTGAA
GATTCAACAGCCTATGTTCGAGAAATACTTGACAAGAAGTGGGGAGAGTT
GCTCCAGCATGTTCTGATGGATGGATTCGGAGATTTGCCCAAACCATGCA
AGCTTCTCCATTTATCATGCGTGAAAGTGTTTCAGATGTTCTTCCACTCC
CGCAACAGATTTGATTCCAACACGGAGATGCGTCAGGACATCCAAAAGGC
AATCTACGTCCCTCTAAATGTTGGAACCTCAAAACCGTTGATACCTCCTC
AGAAGGAAGATCAAGCAATCAACTCCCTCTCTGGTCAGCCTTCCAAATAT
GAAATATCACAGATCGAGCAAGCTAGTTCTTGA
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protein sequence of Tc06v2_p016020.1

>Tc06v2_p016020.1 ID=Tc06v2_p016020.1|Name=Tc06v2_p016020.1|organism=Theobroma cacao|type=polypeptide|length=811bp
MELLHVSIQAIVKDVKEEMSLEIDPYSFVSPSAYDTAWLAMINPAADSNQ
PLSSPMFKACLDWVLNNQTEEGYWGECDSHGNPTIESLPATLACVIALKK
WNVGNKNIERGLDFVHGNAEKHLGVTHDHFPRWFTIVFPGMIELALKAGL
ELAFPSQLNELLSDIFHQRQRILETEELVDSQYPPLLSYIEALPSSYDIS
GEDITMNLSGDGSLFQSPAATARAFMATGKEECLGYLESLVRRCADGVPP
TYPMDEELIKLCVVNQLQRLGLADHFTHEIEANLAQLYRNYNSQESQAKP
SSNPVSAIQLHKDSLAFRLLRMHGYSVSPWQFFWFLKNQEVRARIEKDYE
YFSSAMLNVYRATDFMFPGEYELEEARSFSRKVIEKVLSKGTRDNKDNFR
SINLEKMMEHELRHPWIARLDHLEHRTWIEDRNSNILWVGKAFLHRLSPL
LTEKLMQLAVADYEFRQFIYRNELEEVKRWSKSRGLSDMGFGREKTTYCY
FAIASSIPLPYDSDIRVMIAKSAIVVTVADDFYDMEGSLDELNSLTDAIG
RWDASELTGHSKTIFDALDDLVREIVAKVLQHQGTDITIFLQQIWYETFA
SWLVEAKWSRGGFLPSIDEYLRTGMISIAAHTIILPASFLSNPSLIDCKV
RPGEYEAVTKLLMLIPRLLNDIQSYQKEQEEGKMNCVLLYLKENPGADIE
DSTAYVREILDKKWGELLQHVLMDGFGDLPKPCKLLHLSCVKVFQMFFHS
RNRFDSNTEMRQDIQKAIYVPLNVGTSKPLIPPQKEDQAINSLSGQPSKY
EISQIEQASS*
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