Tc06v2_t015920.1

Overview
NameTc06v2_t015920.1
Unique NameTc06v2_t015920.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1677
Properties
Property NameValue
NotePolyphenol oxidase, chloroplastic
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 24 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productpolyphenol oxidase I, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596897
GenbankXM_007025642.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g015920Tc06v2_g015920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p015920.1Tc06v2_p015920.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto344811auto344811Theobroma cacaoexon
exon-auto344812auto344812Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto344813auto344813Theobroma cacaoCDS
CDS-auto344814auto344814Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t015920.1 ID=Tc06v2_t015920.1|Name=Tc06v2_t015920.1|organism=Theobroma cacao|type=mRNA|length=1677bp
ATGCCATGCCAAAGTGTTTCCATATTCATCAAAGCTGTAGTACCACTAAA
ATCCAGCCATGGCTTTTCCTGTCCTTTTATCGTCAAACCCATCATTGTCC
CCAGCTTATCCATTCAGACTTCCTTCTTTCCAAAAACATCTCAACTTTCT
TTAAATGAGAAGATAAAAAAGCCTCACTACTCCGTCCCTAATAAAGTAGT
GTCATGCAAAGCCGCGAATTATGGGAACCAAAACCCTACTCCTAGTTCCA
GAAAAACGACAAAGATCGTAGATTTCAAACTACCTTCATTTTCCAAGCTA
CGTTATAGGCGTCCTGCACATTTAGTTGATGCTGACTACGTAGCTGAATT
TACCAAGGCCGTGAATCTCATGAAAGATCTTCCTCCTGATGATCCACGTA
GTTTCATGCAACAGGCAAATGTTTATCGTGCCTATTGCAACGGAGCTTAT
GATCAAGTAGGTTTCCCGGATCAAGATCTTCAAATCCATTTCTCATCGCT
CTTTTTCCCATTTCATAGGCTGTATCTTTATTTCTATGAAAGGATTTTGG
GCAAGTTGATTGGTGACCCAGATTTCGCCATGCCATTTTGGAACTGGGAT
GCCCCTGCAGGCATGTCTATACCTGCCATATATGTAAACCCTCAATCTCT
ACTCTACGATGACAAGCGCAATGTTAGCCATCAGCCACCAAAACTGGTTG
ATCTTGATTACAATGGCACTGATAAAGAGATAACAGACAAAGAGCTAGTA
CTAAGTAATCTCAAGGTCATGTACAGGCAAATGGTGTCTGGTGCAAAGAC
CGCTTCTCTTTTCCATGGAAAGGTGTACCGTGCTGGTGATAAACCCATTC
CAGGAGCGGGTTCCATCGAGGCTGGTTGTTATACCGCGATTCGCATGTGG
GTTGAAGACCAGAAACAAGAATATGAGGAAGACATGGGAAATTTCTATTC
CTCAGGCAGAGATGTGATGTTCTACGGTCTTCACGCCAATGTTGACCGAA
TGTGGTCGGTTTGGGAGAAGACCTTGGGGCAAAATAATTTCAATGACGCA
GAACGGCTTAATGCCACGTTTTATTTTTACGATGAGAATGCGAATCTTGT
TCGTGCTAAGGTTCGTGATTGCCTTGACAATAAAACTTTGGGATACGATT
ATGAACCAGTTGAAATGCCATGGCGTCTAACTAAGCCAGTTACTCGAAAG
CTTGGCAAGAAAGGAGGAAGGGGTCATGGTCATGCAATGGCAGCCGAAAT
AAAGAACAAAAACATTATACGCAATGCATTCCCGATAGTTTTAGACAAAA
CATTGAGCATTGAGATTCCAAGGCCAAGAAAATCGAGGAGTAAACGTGAA
AAAGAAGAAGAAGAAGAAGTATTGGTGCTAGAAAGCATTCAGTTAGAGAG
GGATGCTTCAGTGAAATTTGATGTGTACATTAACGATGAGGATGACGAGG
CACCTAGTGGACCAGAAGATGCAGAGTTTGCAGGGAGCTTTACCAATATT
CCTCATAACCATAAGCACGCCAAGAAGTTGGAGACAAGTTTTTCTTTGGC
AATATCAGATTTGCTGGAGGATTTGGATGTTGAAGGTGATGATAATATTG
TGGTGACTTTGGTGCCTCGAAGAGGGAAGGGTCTTGTTACGGTCGGCAAC
ATCAAGATTAATTATATCCGAGAATGA
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protein sequence of Tc06v2_p015920.1

>Tc06v2_p015920.1 ID=Tc06v2_p015920.1|Name=Tc06v2_p015920.1|organism=Theobroma cacao|type=polypeptide|length=559bp
MPCQSVSIFIKAVVPLKSSHGFSCPFIVKPIIVPSLSIQTSFFPKTSQLS
LNEKIKKPHYSVPNKVVSCKAANYGNQNPTPSSRKTTKIVDFKLPSFSKL
RYRRPAHLVDADYVAEFTKAVNLMKDLPPDDPRSFMQQANVYRAYCNGAY
DQVGFPDQDLQIHFSSLFFPFHRLYLYFYERILGKLIGDPDFAMPFWNWD
APAGMSIPAIYVNPQSLLYDDKRNVSHQPPKLVDLDYNGTDKEITDKELV
LSNLKVMYRQMVSGAKTASLFHGKVYRAGDKPIPGAGSIEAGCYTAIRMW
VEDQKQEYEEDMGNFYSSGRDVMFYGLHANVDRMWSVWEKTLGQNNFNDA
ERLNATFYFYDENANLVRAKVRDCLDNKTLGYDYEPVEMPWRLTKPVTRK
LGKKGGRGHGHAMAAEIKNKNIIRNAFPIVLDKTLSIEIPRPRKSRSKRE
KEEEEEVLVLESIQLERDASVKFDVYINDEDDEAPSGPEDAEFAGSFTNI
PHNHKHAKKLETSFSLAISDLLEDLDVEGDDNIVVTLVPRRGKGLVTVGN
IKINYIRE*
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