Tc06v2_t015670.1

Overview
NameTc06v2_t015670.1
Unique NameTc06v2_t015670.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1356
Properties
Property NameValue
NoteRNA polymerase II transcription factor B subunit 2
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
ProductRNA polymerase II transcription factor B subunit 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596870
GenbankXM_007025595.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g015670Tc06v2_g015670Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p015670.1Tc06v2_p015670.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto344355auto344355Theobroma cacaoexon
exon-auto344356auto344356Theobroma cacaoexon
exon-auto344357auto344357Theobroma cacaoexon
exon-auto344358auto344358Theobroma cacaoexon
exon-auto344359auto344359Theobroma cacaoexon
exon-auto344360auto344360Theobroma cacaoexon
exon-auto344361auto344361Theobroma cacaoexon
exon-auto344362auto344362Theobroma cacaoexon
exon-auto344363auto344363Theobroma cacaoexon
exon-auto344364auto344364Theobroma cacaoexon
exon-auto344365auto344365Theobroma cacaoexon
exon-auto344366auto344366Theobroma cacaoexon
exon-auto344367auto344367Theobroma cacaoexon
exon-auto344368auto344368Theobroma cacaoexon
exon-auto344369auto344369Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto344370auto344370Theobroma cacaoCDS
CDS-auto344371auto344371Theobroma cacaoCDS
CDS-auto344372auto344372Theobroma cacaoCDS
CDS-auto344373auto344373Theobroma cacaoCDS
CDS-auto344374auto344374Theobroma cacaoCDS
CDS-auto344375auto344375Theobroma cacaoCDS
CDS-auto344376auto344376Theobroma cacaoCDS
CDS-auto344377auto344377Theobroma cacaoCDS
CDS-auto344378auto344378Theobroma cacaoCDS
CDS-auto344379auto344379Theobroma cacaoCDS
CDS-auto344380auto344380Theobroma cacaoCDS
CDS-auto344381auto344381Theobroma cacaoCDS
CDS-auto344382auto344382Theobroma cacaoCDS
CDS-auto344383auto344383Theobroma cacaoCDS
CDS-auto344384auto344384Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t015670.1 ID=Tc06v2_t015670.1|Name=Tc06v2_t015670.1|organism=Theobroma cacao|type=mRNA|length=1356bp
ATGCCTCAGGTGAAGATAATCGCGAAGAATTTCATGGACATGGTGGCTTC
ATTGCCTGCCATTAAGCTCGACATGCTTTATCGTAATCAATTCATTTGCG
AAGCCATTCTCAGGTCGATGCCGCCTCTTGCAAAGAAATATGTGTTACAG
ATGTTGTACATTGATGTTCCGGTGACAGCCAAGTCGTTGGAGGAGTGGGT
GCTTGCCGATGGATCCTCTAAGCACAAAGTTGCCATCGATCGGTTGATTC
AGTTAAGAATATTAGAAGTAATCGATAGGAAGAAGGAAACCATTTACAAG
TTAAATCCCACATTTCAGACTAACCTCCGGAAACATTTGATATATGGAGG
GATTTTGCCAAGAGAACCAATGCCTTCAAATGTTACTGTGAGACTCCCTA
CCTCAGAGGAACTTGATGCCTATGCACATGAACAATGGGAGTGTTTCTTG
CTGCAACTTATAAGTTCAGGACAAGCTGAAAAACCAACAAATTTCAGCTC
TTCCATGATGAGAATTTTTCAGCGTGGTCTTTTGTGTCAGAGGGAGAAAG
AAGCTCCAAGATTAACTGAGAGTGGTTTCCAGTTTTTGCTGATGGATACA
AATGCTCAGCTTTGGTATATTATCAGAGAATATATCTCCAATTCAGAGGA
GCAAGGTGTAGACCAAGCAGATTTAATTGCATTTTTGCTAGAACTTAGTT
TTCATACCACTGGTGAGGCATATAATATGAATACACTGACAGATGACCAG
AGAGCTATGATCAAGGACCTTTCAGACTTGGGATTGGTCAAACTTCAGCA
GGGCAGGAAAGATAGTTGGTTTATACCTACTAAATTGGCCACCAATCTTT
CAGTGAGCTTAACAGATTCATCATCAAGGAAACAGGGATTTGTTGTTGTG
GAAACAAACTTTAGGATGTACGCATACTCGTCATCTAAGTTACACTGTGA
AATTTTACGTCTATTTTCAAGGGTAGAGTATCAACTTCCAAACCTCATAG
TTGGTGCAATAACGAAAGAGAGCCTGTATAATGCTTTTGAAAATGGCATT
GCAGCTGAGCAGATAATTACATTCCTTCAGCAGAATGCACATCCTCGAGT
TGCTGAGAAATTACCATCTGTACCTGAAAATGTCACCGACCAGATAAGAT
TGTGGGAAACTGATTTGAATAGAGTTGAGATGACTCCTGCGCATTTTTAT
GATGACTTTCCTTCAAGGGACGTCTTTGAGGCTGCTTCTGACTTTGCTCG
CGTGCATTGCGGTTTACTATGGGAGGATGCTAAGAAAATGCGAATGGTTG
TCAAGGCAGAGGTTCATATGCTTATGCGAGAGCAGCTTCGTGGTCAAAAC
AAGTAG
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protein sequence of Tc06v2_p015670.1

>Tc06v2_p015670.1 ID=Tc06v2_p015670.1|Name=Tc06v2_p015670.1|organism=Theobroma cacao|type=polypeptide|length=452bp
MPQVKIIAKNFMDMVASLPAIKLDMLYRNQFICEAILRSMPPLAKKYVLQ
MLYIDVPVTAKSLEEWVLADGSSKHKVAIDRLIQLRILEVIDRKKETIYK
LNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEELDAYAHEQWECFL
LQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLMDT
NAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQ
RAMIKDLSDLGLVKLQQGRKDSWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGI
AAEQIITFLQQNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTPAHFY
DDFPSRDVFEAASDFARVHCGLLWEDAKKMRMVVKAEVHMLMREQLRGQN
K*
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