|
Properties
Property Name | Value |
Note | DNA-directed RNA polymerase II subunit RPB2 |
Model evidence | Supporting evidence includes similarity to: 8 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns |
Product | DNA-directed RNA polymerase II subunit RPB2 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc06v2_t015520.1 ID=Tc06v2_t015520.1|Name=Tc06v2_t015520.1|organism=Theobroma cacao|type=mRNA|length=3570bp ATGGAGGACGACAGTGAGTACGATCCGCAACTTATGGACGACGAAGACGA CGAGGAGATCACGCAGGAAGACGCGTGGGCGGTTATCTCAGCTTACTTCG AAGAAAAAGGTCTGGTGCGTCAACAGCTCGACTCGTTCGATGAATTTATC CAAAACACTATGCAAGAAATCGTCGACGAATCGGCCGATATTGAGATCAG GCCAGAGTCACAGCACAATCCTGGTCACCAGTCCGACTTTGCTGAGACTA TCTATAAGATTAGCTTTGGTCAGATCTACCTTAGTAAACCTATGATGACC GAGTCAGATGGTGAAACTGCAACTTTATTTCCAAAAGCTGCAAGGTTGAG GAATCTTACTTACTCAGCTCCATTGTATGTCGATGTAACTAAGAGAGTTA TAAAGAAAGGGCATGATGGTGAAGAAGTCACTGAGACTCAGGATTTTACT AAAGTGTTCATTGGGAAGGTTCCTATAATGCTCCGGTCAAGTTATTGCAC ACTATATCAAAATTCAGAGAAGGATCTGACCGAGCTTGGGGAGTGTCCAT ATGATCAAGGTGGGTATTTCATTATCAATGGGAGTGAAAAGGTTCTAATT GCTCAGGAGAAGATGAGCACAAATCATGTCTATGTCTTCAAAAAGAGGCA GCCGAACAAATATGCCTATGTGGCAGAAGTTCGGTCCATGGCAGAGTCCC AGAATAGGCCACCAAGTACCATGTTTGTGCGGATGCTTTCTCGGACTAGT GCCAAAGGGGGCTCTTCGGGGCAGTACATTCGTGCTACTCTTCCATATAT TCGGACTGAAATTCCTATCATAATTGTCTTTCGGGCTTTGGGATTTGTTG CTGACAAGGACATATTAGAGCATATATGCTATGACTTCTCCGACACCCAG ATGATGGAGTTGCTTAGGCCTTCCTTAGAAGAAGCATTTGTGATTCAAAA CCAGCAGGTTGCACTAGATTATATTGGTAAAAGAGGAGCAACTGTTGGTG TTACCAGAGAAAAGAGGATTAAGTATGCTAAAGAGATCCTCCAAAAAGAA ATGCTTCCTCACGTAGGTGTTGGAGATTTTTGCGAGACAAAGAAAGCTTA TTATTTTGGATATATTATTCACCGGCTGCTTCTTTGTGCACTTGGCCGGA GGGCGGAAGATGATAGAGATCATTATGGCAACAAGAGGTTGGACCTTGCT GGTCCATTACTTGGAGGCCTCTTTAGAATGCTTTTTCGGAAGTTAACTAG GGATGTGAGATCTTATGTGCAGAAGTGTGTTGATAACGGGAAGGATGTGA ACCTGCAATTTGCTATCAAAGCGAAAACTATTACAAGTGGTCTTAAATAC TCACTTGCTACTGGAAATTGGGGGCAAGCAAATGCAGCTGGTACTAGAGC TGGAGTGTCACAGGTGTTAAACCGTTTGACATATGCCTCAACTTTGTCAC ACTTGCGAAGGCTCAATTCTCCTATAGGACGTGAAGGGAAATTGGCTAAA CCACGTCAGTTGCATAATTCACAGTGGGGAATGATGTGTCCAGCGGAAAC ACCGGAAGGACAGGCCTGTGGACTTGTAAAGAATCTTGCCTTGATGGTAT ACATAACTGTCGGATCAGCTGCATATCCTATTCTTGAATTTTTGGAAGAG TGGGGTACGGAGAATTTTGAGGAAATCTCACCTGCAGTTATCCCTCAAGC TACAAAAATTTTTGTCAATGGTTGCTGGGTTGGTGTACATCGGAATCCTG ATATGCTTGTGACAACATTGAGACGGTTGAGAAGACGGGTTGATGTCAAT ACTGAAGTTGGTGTTGTTAGAGATATCCGTCTAAAAGAACTTCGAATATA TACTGACTATGGTCGTTGCAGTCGACCATTGTTCATCGTGGAGAAACAAA GACTTCTCATAAAGAAGAAAGATATTCATGCACTGCAACAAAGAGAAAGC CCAGAAGACGGTGGCTGGCATGATCTTGTAGCAAAGGGATTTATAGAATA CATTGACACGGAAGAAGAGGAGACAACAATGATTTCCATGACCATCAATG ATCTTGTACAAGCGAGAGTCAATCCAGAGGAAGCTTATTCTGAAACTTAT ACCCATTGTGAGATCCACCCTTCATTGATTTTGGGTGTTTGTGCTTCAAT TATACCATTTCCTGATCATAATCAGTCCCCGCGTAATACCTATCAATCTG CTATGGGTAAGCAAGCAATGGGAATATATGTTACCAACTACCAATTTCGA ATGGATACATTGGCCTATGTTCTCTATTATCCCCAAAAGCCACTTGTTAC TACACGAGCTATGGAACATCTCCACTTTCGGCAGCTTCCAGCTGGCATTA ATGCTATTGTTGCTATCGCCTGCTATTCTGGATATAACCAAGAAGATTCT GTTATTATGAATCAATCATCAATAGACCGTGGATTCTTCCGATCACTTTT CTTCCGCTCTTACCGAGATGAGGAGAAAAAAATGGGGACCCTTGTTAAAG AAGATTTTGGTCGACCAGATAGGGCTAATACTATGGGAATGAGGCATGGC TCTTATGATAAATTGGATGATGATGGTCTTGCACCTCCTGGAACAAGAGT TTCAGGTGAGGATGTAATCATCGGAAAGACCACCCCGATTTCTCAGGAAG AAGCTCAGGGACAAGCATCACGCTATTCAAGACGTGATCATAGCATAAGC TTACGTCACAGTGAAACAGGCATAGTGGACCAAGTTCTATTGACAACTAA TGCTGATGGGTTGAGATTTGTGAAAGTAAGGGTAAGATCTGTTCGCATTC CCCAGATTGGGGACAAGTTTAGCAGTAGACATGGTCAAAAGGGGACAGTG GGCATGACATACACGCAGGAAGACATGCCTTGGACTGTGGAAGGCATCAC ACCCGATATCATTGTGAACCCACATGCTATTCCTTCTCGAATGACAATTG GTCAGCTTATTGAATGTATCATGGGGAAAGTTGCAGCTCACATGGGCAAG GAAGGGGATGCCACTCCTTTTACAGATGTCACCGTGGACAATATCAGCAG AGCTCTTCATAAATGTGGATATCAAATGCGTGGTTTTGAGACCATGTATA ATGGGCACACAGGCAGGCGCCTTTCTGCTATGATATTTTTGGGGCCCACA TATTACCAAAGACTAAAGCACATGGTTGATGATAAGATCCATTCTCGTGG TCGGGGCCCTGTGCAGATCCTGACAAGGCAGCCTGCAGAGGGACGATCCC GTGATGGTGGTCTCCGTTTCGGAGAGATGGAAAGAGATTGCATGATTGCG CATGGTGCTGCTCATTTCCTTAAAGAGAGATTGTTTGACCAAAGTGATGC ATACAGGGTCCATGTGTGCGAGCGTTGTGGGTTGATTGCTATTGCAAATC TAAAGAAGAACTCATTTGAGTGCAGAGGATGCAAGAATAAAACTGATATT GTTCAGGTATACATTCCTTACGCCTGTAAGCTGCTCTTCCAAGAGCTTAT GGCCATGGCAATTGCTCCAAGAATGCTCACAAAGGAACCTCCCAAAGACC AAAAGAAGAAAGGAGCCTGA back to topprotein sequence of Tc06v2_p015520.1 >Tc06v2_p015520.1 ID=Tc06v2_p015520.1|Name=Tc06v2_p015520.1|organism=Theobroma cacao|type=polypeptide|length=1190bp
MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFI QNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMT ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFT KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKE MLPHVGVGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA GPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKY SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE WGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETY THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSIS LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK EGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDI VQVYIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA* back to top
|