Tc06v2_t014820.4

Overview
NameTc06v2_t014820.4
Unique NameTc06v2_t014820.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2247
Properties
Property NameValue
NoteAuxin response factor 3
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productauxin response factor 3, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596775
GenbankXM_007025459.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g014820Tc06v2_g014820Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p014820.4Tc06v2_p014820.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto342912auto342912Theobroma cacaoexon
exon-auto342913auto342913Theobroma cacaoexon
exon-auto342914auto342914Theobroma cacaoexon
exon-auto342915auto342915Theobroma cacaoexon
exon-auto342916auto342916Theobroma cacaoexon
exon-auto342917auto342917Theobroma cacaoexon
exon-auto342918auto342918Theobroma cacaoexon
exon-auto342919auto342919Theobroma cacaoexon
exon-auto342920auto342920Theobroma cacaoexon
exon-auto342921auto342921Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto342922auto342922Theobroma cacaoCDS
CDS-auto342923auto342923Theobroma cacaoCDS
CDS-auto342924auto342924Theobroma cacaoCDS
CDS-auto342925auto342925Theobroma cacaoCDS
CDS-auto342926auto342926Theobroma cacaoCDS
CDS-auto342927auto342927Theobroma cacaoCDS
CDS-auto342928auto342928Theobroma cacaoCDS
CDS-auto342929auto342929Theobroma cacaoCDS
CDS-auto342930auto342930Theobroma cacaoCDS
CDS-auto342931auto342931Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t014820.4 ID=Tc06v2_t014820.4|Name=Tc06v2_t014820.4|organism=Theobroma cacao|type=mRNA|length=2247bp
ATGGGGGGATTAATCGATCTGAACACAACGGAAGACGATGAAACGCCGTC
ATATGGTTCTTTATCTCCATCTTCGTCCTCAACTTCGGTGTTAAGTGCTT
CTGGGATAAGTGCACCTGGTTCCGCTTCTAGTTCTTCAGTTTGTTTAGAG
CTTTGGCATGCTTGTGCTGGACCACTTATATCTTTGCCGAAGAGAGGAAG
TGTAGTGGTGTACTTCCCTCAGGGCCACTTGGAACAAGTTTCCGATTTTT
CCGGCGTTGCTGCAGCTTATGATCTCCCTCCCCACGTGTTTTGTCGGGTT
GTTGATGTCAAACTACATGCAGAGGCTGCAACAGACGAGGTTTACGCTCA
AGTTTCACTGGTTCCTGAAAGTGAGCAAACTGAGCAGAAGTTGCGGGAAG
GGAAGATAGAAGCCGGTGGTGAAGAGGAGGATGTCGAAGCAGATATCAAG
TCAACGACGCCCCACATGTTCTGCAAGACCCTTACGGCTTCTGATACCAG
TACACATGGAGGCTTCTCTGTTCCGCGTCGAGCTGCTGAGGACTGCTTCC
CGCCCTTGGATTATAATCAGCAGAGGCCCTCACAAGAGCTTGTTGCAAAA
GACCTTCATGGCTTGGAATGGAGGTTTCGACACATTTATAGGGGGCAACC
TCGGAGACATTTGCTCACTACTGGATGGAGTGCTTTTGTAAACAAGAAGA
AGCTTGTCTCTGGAGATGCTGTGCTCTTTCTTAGGGGTGAGGATGGAGAA
CTAAGGCTGGGTATTCGAAGAGCTGCTCAAATTAAAAATGGCACATCTTT
TCCATCTTTGTGCAGCCAGCAGTTGAACCGCAGCAATTTTGCAGATGTAG
TCCATGCTATATCTATGAAAAGTGTTTTTAGCATTTACTACAATCCAAGA
GCCAGTTCATCAGAGTTCATAATACCAGTGCATAAATTCTGGAAGAGTCT
TGATCATTCTTTTGCTGTTGGAATGAGGTTCAAAATGCGTTTTGAAACTG
AAGATGCAGCAGAACGAAGATACACAGGACTCGTAACTGGAATCAGTGAT
ATGGATCCTGTTAGATGGCCTGGTTCAAAATGGAGATGCCTGCTGGTAAG
GTGGGATGATATCGATGCTAATAGGCATAGCAGGGTTTCTCCCTGGGAAA
TTGAGCTGTCTGGTACAATTTCTAGTTCTAACAACTTGCTTACACCTGGT
GTGAAAAGGAACAGGATTGGATTGCCTTCAGGAAAACCAGAATTTATGGT
TCCTGATGGAATTGGAGCATCTGACTTTGGGGAACCTTTGCGGTTCCAGA
AGGTCTTGCAAGGTCAAGAAATCTTGGGTTTTAACACTCTTTATGATGGT
GCTGATGGTCAGAATCTGCATCGGTCTGAAATAAGGCGGTGCTTTCCTGG
TTCCAATGGTTCTGGTATTGTTGCAATAGGAAATGTTGGTAGAGACCCAC
TGGGGAATTCCGAAATTTCCTATAGAGGTGTAGGCTTTGGGGAATCTTTC
CGATTCCATAAGGTCTTGCAAGGTCAAGAAATTTATGTAAGCCCTCCATA
TATTAGAGGTCCAACTACAAATGATACTCAAGAAAATGATGGTCTTGGAG
TCCGAGATGCTGGTCAGTTTTCGGGAACAAGAAGTGGATGGTCTTCCTTG
ATGCAGAGCTATAATACTCATAGTCATATACGGCCATCTGCACCATCTGC
ACAAGTGTCTTCACCATCTTCGGTGTTAATGTTCCAGCAAGCAAGCAATC
CAATTCCAAACATCAATCCTATTTATAGCGTCAATAACCAGGAAAAGGAG
CAGGGAGTTGACAACCGGAGTTCTTTTCGTGCACCTGAAATGTATGGGGG
AAAGTTATTGCAATCTTCAACTGGTGAATGCAGTTCCCGTGGGAGGCATC
ATGGAACCTTTGACTCGTTTGGCCACTCAAATGATTCTGTTCAACTTGGT
GACTCACAACCTCTTGCAGCTCAACCAACATTTAGGACTAGTCAAGATAT
AGCTTCCTCGTGTAAAAGTAGCTGCAGACTTTTTGGATTCTCCTTGACTG
AGGGAAGTCAGGATGCTAATAAGGAGGACAACATGGTGAAAGCGACCTTA
TCATTGGGTCCTGGAGCTTTTTTACCTTGTATTGGCGAGCAGTTTCACCC
AAAGCCTCCAGCAGTGACAAACACAGTGGGAAGCAATTGTACCAAAGTAA
GCAACCTCTATGCTGTCAGAGATTTGCTTTTTGATATTGCATTATAG
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protein sequence of Tc06v2_p014820.4

>Tc06v2_p014820.4 ID=Tc06v2_p014820.4|Name=Tc06v2_p014820.4|organism=Theobroma cacao|type=polypeptide|length=749bp
MGGLIDLNTTEDDETPSYGSLSPSSSSTSVLSASGISAPGSASSSSVCLE
LWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRV
VDVKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIK
STTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAK
DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGE
LRLGIRRAAQIKNGTSFPSLCSQQLNRSNFADVVHAISMKSVFSIYYNPR
ASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGISD
MDPVRWPGSKWRCLLVRWDDIDANRHSRVSPWEIELSGTISSSNNLLTPG
VKRNRIGLPSGKPEFMVPDGIGASDFGEPLRFQKVLQGQEILGFNTLYDG
ADGQNLHRSEIRRCFPGSNGSGIVAIGNVGRDPLGNSEISYRGVGFGESF
RFHKVLQGQEIYVSPPYIRGPTTNDTQENDGLGVRDAGQFSGTRSGWSSL
MQSYNTHSHIRPSAPSAQVSSPSSVLMFQQASNPIPNINPIYSVNNQEKE
QGVDNRSSFRAPEMYGGKLLQSSTGECSSRGRHHGTFDSFGHSNDSVQLG
DSQPLAAQPTFRTSQDIASSCKSSCRLFGFSLTEGSQDANKEDNMVKATL
SLGPGAFLPCIGEQFHPKPPAVTNTVGSNCTKVSNLYAVRDLLFDIAL*
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