Tc06v2_t014820.3

Overview
NameTc06v2_t014820.3
Unique NameTc06v2_t014820.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2238
Properties
Property NameValue
NoteAuxin response factor 3
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productauxin response factor 3, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596775
GenbankXM_007025458.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g014820Tc06v2_g014820Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p014820.3Tc06v2_p014820.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto342888auto342888Theobroma cacaoexon
exon-auto342889auto342889Theobroma cacaoexon
exon-auto342890auto342890Theobroma cacaoexon
exon-auto342891auto342891Theobroma cacaoexon
exon-auto342892auto342892Theobroma cacaoexon
exon-auto342893auto342893Theobroma cacaoexon
exon-auto342894auto342894Theobroma cacaoexon
exon-auto342895auto342895Theobroma cacaoexon
exon-auto342896auto342896Theobroma cacaoexon
exon-auto342897auto342897Theobroma cacaoexon
exon-auto342898auto342898Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto342899auto342899Theobroma cacaoCDS
CDS-auto342900auto342900Theobroma cacaoCDS
CDS-auto342901auto342901Theobroma cacaoCDS
CDS-auto342902auto342902Theobroma cacaoCDS
CDS-auto342903auto342903Theobroma cacaoCDS
CDS-auto342904auto342904Theobroma cacaoCDS
CDS-auto342905auto342905Theobroma cacaoCDS
CDS-auto342906auto342906Theobroma cacaoCDS
CDS-auto342907auto342907Theobroma cacaoCDS
CDS-auto342908auto342908Theobroma cacaoCDS
CDS-auto342909auto342909Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t014820.3 ID=Tc06v2_t014820.3|Name=Tc06v2_t014820.3|organism=Theobroma cacao|type=mRNA|length=2238bp
ATGGGGGGATTAATCGATCTGAACACAACGGAAGACGATGAAACGCCGTC
ATATGGTTCTTTATCTCCATCTTCGTCCTCAACTTCGGTGTTAAGTGCTT
CTGGGATAAGTGCACCTGGTTCCGCTTCTAGTTCTTCAGTTTGTTTAGAG
CTTTGGCATGCTTGTGCTGGACCACTTATATCTTTGCCGAAGAGAGGAAG
TGTAGTGGTGTACTTCCCTCAGGGCCACTTGGAACAAGTTTCCGATTTTT
CCGGCGTTGCTGCAGCTTATGATCTCCCTCCCCACGTGTTTTGTCGGGTT
GTTGATGTCAAACTACATGCAGAGGCTGCAACAGACGAGGTTTACGCTCA
AGTTTCACTGGTTCCTGAAAGTGAGCAAACTGAGCAGAAGTTGCGGGAAG
GGAAGATAGAAGCCGGTGGTGAAGAGGAGGATGTCGAAGCAGATATCAAG
TCAACGACGCCCCACATGTTCTGCAAGACCCTTACGGCTTCTGATACCAG
TACACATGGAGGCTTCTCTGTTCCGCGTCGAGCTGCTGAGGACTGCTTCC
CGCCCTTGGATTATAATCAGCAGAGGCCCTCACAAGAGCTTGTTGCAAAA
GACCTTCATGGCTTGGAATGGAGGTTTCGACACATTTATAGGGGGCAACC
TCGGAGACATTTGCTCACTACTGGATGGAGTGCTTTTGTAAACAAGAAGA
AGCTTGTCTCTGGAGATGCTGTGCTCTTTCTTAGGGGTGAGGATGGAGAA
CTAAGGCTGGGTATTCGAAGAGCTGCTCAAATTAAAAATGGCACATCTTT
TCCATCTTTGTGCAGCCAGCAGTTGAACCGCAGCAATTTTGCAGATGTAG
TCCATGCTATATCTATGAAAAGTGTTTTTAGCATTTACTACAATCCAAGC
AGAGCCAGTTCATCAGAGTTCATAATACCAGTGCATAAATTCTGGAAGAG
TCTTGATCATTCTTTTGCTGTTGGAATGAGGTTCAAAATGCGTTTTGAAA
CTGAAGATGCAGCAGAACGAAGATACACAGGACTCGTAACTGGAATCAGT
GATATGGATCCTGTTAGATGGCCTGGTTCAAAATGGAGATGCCTGCTGGT
AAGGTGGGATGATATCGATGCTAATAGGCATAGCAGGGTTTCTCCCTGGG
AAATTGAGCTGTCTGGTACAATTTCTAGTTCTAACAACTTGCTTACACCT
GGTGTGAAAAGGAACAGGATTGGATTGCCTTCAGGAAAACCAGAATTTAT
GGTTCCTGATGGAATTGGAGCATCTGACTTTGGGGAACCTTTGCGGTTCC
AGAAGGTCTTGCAAGGTCAAGAAATCTTGGGTTTTAACACTCTTTATGAT
GGTGCTGATGGTCAGAATCTGCATCGGTCTGAAATAAGGCGGTGCTTTCC
TGGTTCCAATGGTTCTGGTATTGTTGCAATAGGAAATGTTGGTAGAGACC
CACTGGGGAATTCCGAAATTTCCTATAGAGGTGTAGGCTTTGGGGAATCT
TTCCGATTCCATAAGGTCTTGCAAGGTCAAGAAATTTATGTAAGCCCTCC
ATATATTAGAGGTCCAACTACAAATGATACTCAAGAAAATGATGGTCTTG
GAGTCCGAGATGCTGGTCAGTTTTCGGGAACAAGAAGTGGATGGTCTTCC
TTGATGCAGAGCTATAATACTCATAGTCATATACGGCCATCTGCACCATC
TGCACAAGTGTCTTCACCATCTTCGGTGTTAATGTTCCAGCAAGCAAGCA
ATCCAATTCCAAACATCAATCCTATTTATAGCGTCAATAACCAGGAAAAG
GAGCAGGGAGTTGACAACCGGAGTTCTTTTCGTGCACCTGAAATGTATGG
GGGAAAGTTATTGCAATCTTCAACTGGTGAATGCAGTTCCCGTGGGAGGC
ATCATGGAACCTTTGACTCGTTTGGCCACTCAAATGATTCTGTTCAACTT
GGTGACTCACAACCTCTTGCAGCTCAACCAACATTTAGGACTAGTCAAGA
TATAGCTTCCTCGTGTAAAAGTAGCTGCAGACTTTTTGGATTCTCCTTGA
CTGAGGGAAGTCAGGATGCTAATAAGGAGGACAACATGGTGAAAGCGACC
TTATCATTGGGTCCTGGAGCTTTTTTACCTTGTATTGGCGAGCAGTTTCA
CCCAAAGCCTCCAGCAGTGACAAACACAGTGGGAAGCAATTGTACCAAAG
GAATTCTGCAACGTTGTCTCAAAAATTACATATACTGA
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protein sequence of Tc06v2_p014820.3

>Tc06v2_p014820.3 ID=Tc06v2_p014820.3|Name=Tc06v2_p014820.3|organism=Theobroma cacao|type=polypeptide|length=746bp
MGGLIDLNTTEDDETPSYGSLSPSSSSTSVLSASGISAPGSASSSSVCLE
LWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRV
VDVKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIK
STTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAK
DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGE
LRLGIRRAAQIKNGTSFPSLCSQQLNRSNFADVVHAISMKSVFSIYYNPS
RASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGIS
DMDPVRWPGSKWRCLLVRWDDIDANRHSRVSPWEIELSGTISSSNNLLTP
GVKRNRIGLPSGKPEFMVPDGIGASDFGEPLRFQKVLQGQEILGFNTLYD
GADGQNLHRSEIRRCFPGSNGSGIVAIGNVGRDPLGNSEISYRGVGFGES
FRFHKVLQGQEIYVSPPYIRGPTTNDTQENDGLGVRDAGQFSGTRSGWSS
LMQSYNTHSHIRPSAPSAQVSSPSSVLMFQQASNPIPNINPIYSVNNQEK
EQGVDNRSSFRAPEMYGGKLLQSSTGECSSRGRHHGTFDSFGHSNDSVQL
GDSQPLAAQPTFRTSQDIASSCKSSCRLFGFSLTEGSQDANKEDNMVKAT
LSLGPGAFLPCIGEQFHPKPPAVTNTVGSNCTKGILQRCLKNYIY*
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