Tc06v2_t014820.1

Overview
NameTc06v2_t014820.1
Unique NameTc06v2_t014820.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2184
Properties
Property NameValue
NoteAuxin response factor 3
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productauxin response factor 3, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596775
GenbankXM_018123400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g014820Tc06v2_g014820Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p014820.1Tc06v2_p014820.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto342846auto342846Theobroma cacaoexon
exon-auto342847auto342847Theobroma cacaoexon
exon-auto342848auto342848Theobroma cacaoexon
exon-auto342849auto342849Theobroma cacaoexon
exon-auto342850auto342850Theobroma cacaoexon
exon-auto342851auto342851Theobroma cacaoexon
exon-auto342852auto342852Theobroma cacaoexon
exon-auto342853auto342853Theobroma cacaoexon
exon-auto342854auto342854Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto342855auto342855Theobroma cacaoCDS
CDS-auto342856auto342856Theobroma cacaoCDS
CDS-auto342857auto342857Theobroma cacaoCDS
CDS-auto342858auto342858Theobroma cacaoCDS
CDS-auto342859auto342859Theobroma cacaoCDS
CDS-auto342860auto342860Theobroma cacaoCDS
CDS-auto342861auto342861Theobroma cacaoCDS
CDS-auto342862auto342862Theobroma cacaoCDS
CDS-auto342863auto342863Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t014820.1 ID=Tc06v2_t014820.1|Name=Tc06v2_t014820.1|organism=Theobroma cacao|type=mRNA|length=2184bp
ATGGGGGGATTAATCGATCTGAACACAACGGAAGACGATGAAACGCCGTC
ATATGGTTCTTTATCTCCATCTTCGTCCTCAACTTCGGTGTTAAGTGCTT
CTGGGATAAGTGCACCTGGTTCCGCTTCTAGTTCTTCAGTTTGTTTAGAG
CTTTGGCATGCTTGTGCTGGACCACTTATATCTTTGCCGAAGAGAGGAAG
TGTAGTGGTGTACTTCCCTCAGGGCCACTTGGAACAAGTTTCCGATTTTT
CCGGCGTTGCTGCAGCTTATGATCTCCCTCCCCACGTGTTTTGTCGGGTT
GTTGATGTCAAACTACATGCAGAGGCTGCAACAGACGAGGTTTACGCTCA
AGTTTCACTGGTTCCTGAAAGTGAGCAAACTGAGCAGAAGTTGCGGGAAG
GGAAGATAGAAGCCGGTGGTGAAGAGGAGGATGTCGAAGCAGATATCAAG
TCAACGACGCCCCACATGTTCTGCAAGACCCTTACGGCTTCTGATACCAG
TACACATGGAGGCTTCTCTGTTCCGCGTCGAGCTGCTGAGGACTGCTTCC
CGCCCTTGGATTATAATCAGCAGAGGCCCTCACAAGAGCTTGTTGCAAAA
GACCTTCATGGCTTGGAATGGAGGTTTCGACACATTTATAGGGGGATCTT
ATTTAGTGTCCATAGCAGGGGTGAGGATGGAGAACTAAGGCTGGGTATTC
GAAGAGCTGCTCAAATTAAAAATGGCACATCTTTTCCATCTTTGTGCAGC
CAGCAGTTGAACCGCAGCAATTTTGCAGATGTAGTCCATGCTATATCTAT
GAAAAGTGTTTTTAGCATTTACTACAATCCAAGCAGAGCCAGTTCATCAG
AGTTCATAATACCAGTGCATAAATTCTGGAAGAGTCTTGATCATTCTTTT
GCTGTTGGAATGAGGTTCAAAATGCGTTTTGAAACTGAAGATGCAGCAGA
ACGAAGATACACAGGACTCGTAACTGGAATCAGTGATATGGATCCTGTTA
GATGGCCTGGTTCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGATATC
GATGCTAATAGGCATAGCAGGGTTTCTCCCTGGGAAATTGAGCTGTCTGG
TACAATTTCTAGTTCTAACAACTTGCTTACACCTGGTGTGAAAAGGAACA
GGATTGGATTGCCTTCAGGAAAACCAGAATTTATGGTTCCTGATGGAATT
GGAGCATCTGACTTTGGGGAACCTTTGCGGTTCCAGAAGGTCTTGCAAGG
TCAAGAAATCTTGGGTTTTAACACTCTTTATGATGGTGCTGATGGTCAGA
ATCTGCATCGGTCTGAAATAAGGCGGTGCTTTCCTGGTTCCAATGGTTCT
GGTATTGTTGCAATAGGAAATGTTGGTAGAGACCCACTGGGGAATTCCGA
AATTTCCTATAGAGGTGTAGGCTTTGGGGAATCTTTCCGATTCCATAAGG
TCTTGCAAGGTCAAGAAATTTATGTAAGCCCTCCATATATTAGAGGTCCA
ACTACAAATGATACTCAAGAAAATGATGGTCTTGGAGTCCGAGATGCTGG
TCAGTTTTCGGGAACAAGAAGTGGATGGTCTTCCTTGATGCAGAGCTATA
ATACTCATAGTCATATACGGCCATCTGCACCATCTGCACAAGTGTCTTCA
CCATCTTCGGTGTTAATGTTCCAGCAAGCAAGCAATCCAATTCCAAACAT
CAATCCTATTTATAGCGTCAATAACCAGGAAAAGGAGCAGGGAGTTGACA
ACCGGAGTTCTTTTCGTGCACCTGAAATGTATGGGGGAAAGTTATTGCAA
TCTTCAACTGGTGAATGCAGTTCCCGTGGGAGGCATCATGGAACCTTTGA
CTCGTTTGGCCACTCAAATGATTCTGTTCAACTTGGTGACTCACAACCTC
TTGCAGCTCAACCAACATTTAGGACTAGTCAAGATATAGCTTCCTCGTGT
AAAAGTAGCTGCAGACTTTTTGGATTCTCCTTGACTGAGGGAAGTCAGGA
TGCTAATAAGGAGGACAACATGGTGAAAGCGACCTTATCATTGGGTCCTG
GAGCTTTTTTACCTTGTATTGGCGAGCAGTTTCACCCAAAGCCTCCAGCA
GTGACAAACACAGTGGGAAGCAATTGTACCAAAGTAAGCAACCTCTATGC
TGTCAGAGATTTGCTTTTTGATATTGCATTATAG
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protein sequence of Tc06v2_p014820.1

>Tc06v2_p014820.1 ID=Tc06v2_p014820.1|Name=Tc06v2_p014820.1|organism=Theobroma cacao|type=polypeptide|length=728bp
MGGLIDLNTTEDDETPSYGSLSPSSSSTSVLSASGISAPGSASSSSVCLE
LWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRV
VDVKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIK
STTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAK
DLHGLEWRFRHIYRGILFSVHSRGEDGELRLGIRRAAQIKNGTSFPSLCS
QQLNRSNFADVVHAISMKSVFSIYYNPSRASSSEFIIPVHKFWKSLDHSF
AVGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSKWRCLLVRWDDI
DANRHSRVSPWEIELSGTISSSNNLLTPGVKRNRIGLPSGKPEFMVPDGI
GASDFGEPLRFQKVLQGQEILGFNTLYDGADGQNLHRSEIRRCFPGSNGS
GIVAIGNVGRDPLGNSEISYRGVGFGESFRFHKVLQGQEIYVSPPYIRGP
TTNDTQENDGLGVRDAGQFSGTRSGWSSLMQSYNTHSHIRPSAPSAQVSS
PSSVLMFQQASNPIPNINPIYSVNNQEKEQGVDNRSSFRAPEMYGGKLLQ
SSTGECSSRGRHHGTFDSFGHSNDSVQLGDSQPLAAQPTFRTSQDIASSC
KSSCRLFGFSLTEGSQDANKEDNMVKATLSLGPGAFLPCIGEQFHPKPPA
VTNTVGSNCTKVSNLYAVRDLLFDIAL*
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