Tc06v2_t014160.2

Overview
NameTc06v2_t014160.2
Unique NameTc06v2_t014160.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1731
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productubiquitin-like modifier-activating enzyme atg7, transcript variant X2
NoteUbiquitin-like modifier-activating enzyme atg7
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596704
GenbankXM_018123904.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g014160Tc06v2_g014160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p014160.2Tc06v2_p014160.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto341631auto341631Theobroma cacaoexon
exon-auto341632auto341632Theobroma cacaoexon
exon-auto341633auto341633Theobroma cacaoexon
exon-auto341634auto341634Theobroma cacaoexon
exon-auto341635auto341635Theobroma cacaoexon
exon-auto341636auto341636Theobroma cacaoexon
exon-auto341637auto341637Theobroma cacaoexon
exon-auto341638auto341638Theobroma cacaoexon
exon-auto341639auto341639Theobroma cacaoexon
exon-auto341640auto341640Theobroma cacaoexon
exon-auto341641auto341641Theobroma cacaoexon
exon-auto341642auto341642Theobroma cacaoexon
exon-auto341643auto341643Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto341644auto341644Theobroma cacaoCDS
CDS-auto341645auto341645Theobroma cacaoCDS
CDS-auto341646auto341646Theobroma cacaoCDS
CDS-auto341647auto341647Theobroma cacaoCDS
CDS-auto341648auto341648Theobroma cacaoCDS
CDS-auto341649auto341649Theobroma cacaoCDS
CDS-auto341650auto341650Theobroma cacaoCDS
CDS-auto341651auto341651Theobroma cacaoCDS
CDS-auto341652auto341652Theobroma cacaoCDS
CDS-auto341653auto341653Theobroma cacaoCDS
CDS-auto341654auto341654Theobroma cacaoCDS
CDS-auto341655auto341655Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t014160.2 ID=Tc06v2_t014160.2|Name=Tc06v2_t014160.2|organism=Theobroma cacao|type=mRNA|length=1731bp
ATGAGGAATCATCAATTCCAGCTTTTAATCGAGGCAATCGGAATAGGTGC
TCTGTTCCGGGCATTCTTTACAACACTAATACGATGGAAAGTTTCCATGG
TTTGGATAAACAAGGTCTGCTCAAGGCAGAAGCAAAGAAGATTTGGGAGG
ATATTCATAGTGGAAAAGTTCTGGAGGATTCTGCAGTATTATCAAGATGT
GCCATTCTTTTTGGTCAGTGTCGGTTCTGATTCACGTGCTGCCGTTAGGC
ATCTTAAGGATTGGGAAACCTGTCAAGATGATGGTCAAAAGTTGCTATTT
GCATTTTATGACCCATGTCATCTTCCAAACAATCCTGGCTGGCCTCTCCG
CAACTTCCTAGCATTTATTTGTGCTAGATGGAATCTCAAAACAGTTCACT
TTTTGTGCTATAGAGAGAACCGTGGTTTTGCTGATTTGAGTTTGTCCCTT
GTTGGTGAAGCCTTGATTACAATTTCACAAGGATGGAGGGAACATCAATG
TGTGCCCAATGCTGTAGGATGGGAACTTAACAAGGGGAGAAAAGTACCAA
GGTGTATTAACCTTGCAAAATCCATGGATCCAACCAGGTTAGCTATATCT
GCTGCAGACTTAAATTTGAAACTGATGAGATGGCGTGCTTTGCCATCTCT
TAACTTAGACATCTTGTTTTCTATCAAGTGCCTTCTCCTTGGCGCAGGTA
CACTTGGATGCCAGGTTGCTCGAATGCTTATGGCTTGGGGTGTCCGCAAA
ATCACTCTAGTTGACAATGGCAGGGTGGCCATGTCTAATCCATTGAGGCA
GTCCCTGTACACATTGGATGACTGCCTCAATGGTGGTGATTTTAAAGCCA
CAGCAGCAGTGAGAAGCCTACAGCGAATATTTCCTGCAGTGGTAGCAGAA
GGTGTTGTTATGGCCATTCCTATGCCTGGACATCCAGTGTCCAGCCAAGA
AGAGAACAGTGTGCTTGAAGATTGTAGACGACTCAACGATTTGATTGGTT
CTCATGATGTAATTTTCTTGTTGACTGATACTAGAGAGAGTCGGTGGCTC
CCTACACTTCTCTGTGCCAACACTAACAAGATAACCATTACTGCAGCCCT
TGGGTTTGACAGCTTCTTGGTTATGCGCCATGGACCTGGTCCTTTTAACT
CCACTCCTGACTTGAAAGTTGAAATGCCAAATTCTTTATCTGATGTCCTG
GACAACCTTGCCCTAACAAATACAGATGGAAAGCAGAGACTGGGTTGTTA
CTTCTGTAATGATGTGGTTGCCCCAACAGATTCAACTTCGAACCGCACAT
TGGATCAGCAGTGCACTGTTACACGTCCAGGGCTTGCACCTATTGCTTCC
GCACTTGCAGTTGAGCTTTTAGTAGGCATATTGCATCACCCTTATGGGAT
ATTTGCTGAAGCTGAGATTGCCAACTCCAATAATGGTGGAAGTAGTGAGC
TTCCTCTGGGTATTTTACCCCATCAAATACGAGGTTCCCTCCCCCACTTC
CAACAGATGACCCTTGTGGGCCACTCCTCTAACAGTTGTACAGCATGTTG
CAGCACTGTTGTGTCGGAATATCGCAAAAGAGGGATGCAATTCATTCTCC
AAGCAATTAACCATCCCACCTTTTTGGAGGATCTTACTGGACTAACAGAG
TTGATGAGATCAGCAAACACTTTTCAACTAGACTGGGATGATGAGATAGA
GGATGCTGATGATGAATGCATCGAACTATAA
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protein sequence of Tc06v2_p014160.2

>Tc06v2_p014160.2 ID=Tc06v2_p014160.2|Name=Tc06v2_p014160.2|organism=Theobroma cacao|type=polypeptide|length=577bp
MRNHQFQLLIEAIGIGALFRAFFTTLIRWKVSMVWINKVCSRQKQRRFGR
IFIVEKFWRILQYYQDVPFFLVSVGSDSRAAVRHLKDWETCQDDGQKLLF
AFYDPCHLPNNPGWPLRNFLAFICARWNLKTVHFLCYRENRGFADLSLSL
VGEALITISQGWREHQCVPNAVGWELNKGRKVPRCINLAKSMDPTRLAIS
AADLNLKLMRWRALPSLNLDILFSIKCLLLGAGTLGCQVARMLMAWGVRK
ITLVDNGRVAMSNPLRQSLYTLDDCLNGGDFKATAAVRSLQRIFPAVVAE
GVVMAIPMPGHPVSSQEENSVLEDCRRLNDLIGSHDVIFLLTDTRESRWL
PTLLCANTNKITITAALGFDSFLVMRHGPGPFNSTPDLKVEMPNSLSDVL
DNLALTNTDGKQRLGCYFCNDVVAPTDSTSNRTLDQQCTVTRPGLAPIAS
ALAVELLVGILHHPYGIFAEAEIANSNNGGSSELPLGILPHQIRGSLPHF
QQMTLVGHSSNSCTACCSTVVSEYRKRGMQFILQAINHPTFLEDLTGLTE
LMRSANTFQLDWDDEIEDADDECIEL*
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