Tc06v2_t013790.1

Overview
NameTc06v2_t013790.1
Unique NameTc06v2_t013790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1107
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 27 ESTs, 77 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productshaggy-related protein kinase eta
NoteShaggy-related protein kinase eta
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596662
GenbankXM_007025280.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g013790Tc06v2_g013790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p013790.1Tc06v2_p013790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto340942auto340942Theobroma cacaoexon
exon-auto340943auto340943Theobroma cacaoexon
exon-auto340944auto340944Theobroma cacaoexon
exon-auto340945auto340945Theobroma cacaoexon
exon-auto340946auto340946Theobroma cacaoexon
exon-auto340947auto340947Theobroma cacaoexon
exon-auto340948auto340948Theobroma cacaoexon
exon-auto340949auto340949Theobroma cacaoexon
exon-auto340950auto340950Theobroma cacaoexon
exon-auto340951auto340951Theobroma cacaoexon
exon-auto340952auto340952Theobroma cacaoexon
exon-auto340953auto340953Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto340954auto340954Theobroma cacaoCDS
CDS-auto340955auto340955Theobroma cacaoCDS
CDS-auto340956auto340956Theobroma cacaoCDS
CDS-auto340957auto340957Theobroma cacaoCDS
CDS-auto340958auto340958Theobroma cacaoCDS
CDS-auto340959auto340959Theobroma cacaoCDS
CDS-auto340960auto340960Theobroma cacaoCDS
CDS-auto340961auto340961Theobroma cacaoCDS
CDS-auto340962auto340962Theobroma cacaoCDS
CDS-auto340963auto340963Theobroma cacaoCDS
CDS-auto340964auto340964Theobroma cacaoCDS
CDS-auto340965auto340965Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t013790.1 ID=Tc06v2_t013790.1|Name=Tc06v2_t013790.1|organism=Theobroma cacao|type=mRNA|length=1107bp
ATGGCCGACGATAAGGAAATGTCTGCCGCTGTTGTTGATGGTAACGATCC
GGTCACGGGCCACATCATTTCCACAACGATTGGAGGCAAAAATGGAGAAC
CTAAACAGACCATCAGTTATATGGCAGAGCGTGTAGTTGGAACAGGATCA
TTTGGGATTGTTTTCCAGGCAAAATGCTTGGAAACAGGAGAGACTGTAGC
TATAAAGAAGGTTTTGCAAGACAGAAGATATAAGAACCGTGAACTGCAAT
TGATGCGCGTGCTGGATCATCCCAATGTGATTTCCTTGAAGCATTGTTTC
TTTTCCACGACAACTAAAAATGAGCTATTCCTTAACTTGGTTATGGAATA
TGTTCCGGAGAGCATGTATAGGGTTTTGAAACATTACAGCAGTGCAAATC
AAAGAATGCCACTCATCTACGTGAAACTGTACACATACCAGATATTCAGG
GGGCTTGCATATCTCCATAGTGTTGCTGGAGTTTGCCATAGGGATTTGAA
GCCTCAAAATCTCTTGGTTGATCCTCTGACTCACCAGGTTAAGATTTGTG
ATTTTGGAAGTGCAAAAGTGCTTGTCAAAGGTGAAGCTAACATTTCATAC
ATATGTTCACGTTTCTATCGGGCTCCAGAACTTATCTTTGGTGCCACAGA
ATACACAACCTCAATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAAC
TTTTGCTGGGCCAGCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTT
GTCGAGATTATCAAGGTCCTAGGTACACCCACTAGAGAAGAAATTCGCTG
CATGAATCCCAATTACACAGATTTTAGGTTTCCACAGATTAAAGCGCATC
CTTGGCATAAGGTTTTTCATAAACGGATGCCTCCTGAAGCAATTGATCTT
GCTTCACGCTTGCTGCAATACTCACCAAGTCTTCGCTGTACAGCGCTTGA
AGCATGCTCGCATCCCTTCTTTGATGAGCTTCGAGAACCTAATGCTCGCC
TACCAAATGGGCGGCCGTTACCGCCACTTTTCAACTTTAAACAGGAATCA
GATCATGTGAAACGGCAAATAGGGCTACAACATTTCATGCATCCAGCTGG
GACATAA
back to top

protein sequence of Tc06v2_p013790.1

>Tc06v2_p013790.1 ID=Tc06v2_p013790.1|Name=Tc06v2_p013790.1|organism=Theobroma cacao|type=polypeptide|length=369bp
MADDKEMSAAVVDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGS
FGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCF
FSTTTKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFR
GLAYLHSVAGVCHRDLKPQNLLVDPLTHQVKICDFGSAKVLVKGEANISY
ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQL
VEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDL
ASRLLQYSPSLRCTALEACSHPFFDELREPNARLPNGRPLPPLFNFKQES
DHVKRQIGLQHFMHPAGT*
back to top