Tc06v2_t012760.4

Overview
NameTc06v2_t012760.4
Unique NameTc06v2_t012760.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length702
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductUDP-N-acetylglucosamine transferase subunit ALG14 homolog, transcript variant X1
NoteUDP-N-acetylglucosamine transferase subunit ALG14 isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596544
GenbankXM_007025087.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g012760Tc06v2_g012760Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p012760.4Tc06v2_p012760.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto338699auto338699Theobroma cacaoexon
exon-auto338700auto338700Theobroma cacaoexon
exon-auto338701auto338701Theobroma cacaoexon
exon-auto338702auto338702Theobroma cacaoexon
exon-auto338703auto338703Theobroma cacaoexon
exon-auto338704auto338704Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto338705auto338705Theobroma cacaoCDS
CDS-auto338706auto338706Theobroma cacaoCDS
CDS-auto338707auto338707Theobroma cacaoCDS
CDS-auto338708auto338708Theobroma cacaoCDS
CDS-auto338709auto338709Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t012760.4 ID=Tc06v2_t012760.4|Name=Tc06v2_t012760.4|organism=Theobroma cacao|type=mRNA|length=702bp
ATGGAGAAAAACAGTAGCTGTTGCTTCTCCAATTTATCTTCCAATCTTCC
AATCACTTGTTTCGTCACCTTTATTGCAATTATCTTAGTCCGAATTCTCT
ACGTGATTTGGCGAACCTGCAAGCCACTGAGAAAAAGAACTTCGCAGCAG
CCTCTCAGCACTCTCGTTGTTTTGGGTTCAGGAGGACACACGGCAGAGAT
GATTGATCTCTTGTTAGTTTTGCAAAAGAACAAGTTTACGCCGAGGTTTT
ATATAGCCGCTGCTACTGATAATATGAGCCTGCAGAAAGCTCGTGTTTTG
GAGAATTCTTTGGCTGATTCGAGTGGGGTCAAGGAAATCTCTGCTGAGTT
CATGCAGATCTATAGAAGCAGGGAAGTTGGTCAATCATATGTAACCTCTG
TTTGGACAACTTTAGTAGCCCTGGCTCATGCATTGTGGCTGATGATTAAA
ATCAGACCTCAAGTGGTTCTTTGCAATGGCCCTGGTACTTGTATTCCTCT
ATGTGTAATTGCATTCATTTTCAAGGTGGTTGGAATTAGATGGTCATCCA
TCTTTTATGTTGAGAGCATTGCAAGAGTAAAGAGGCTCTCTTTAAGTGGT
TTGTTGCTTTACAAGTTACGGATTGCAGATCAGTTCTTTGTGCAATGGCC
ACAACTGCAGAGAAAATACCCTCGAGCTCATTATGTTGGTTGCCTGATGT
AG
back to top

protein sequence of Tc06v2_p012760.4

>Tc06v2_p012760.4 ID=Tc06v2_p012760.4|Name=Tc06v2_p012760.4|organism=Theobroma cacao|type=polypeptide|length=234bp
MEKNSSCCFSNLSSNLPITCFVTFIAIILVRILYVIWRTCKPLRKRTSQQ
PLSTLVVLGSGGHTAEMIDLLLVLQKNKFTPRFYIAAATDNMSLQKARVL
ENSLADSSGVKEISAEFMQIYRSREVGQSYVTSVWTTLVALAHALWLMIK
IRPQVVLCNGPGTCIPLCVIAFIFKVVGIRWSSIFYVESIARVKRLSLSG
LLLYKLRIADQFFVQWPQLQRKYPRAHYVGCLM*
back to top