Tc06v2_t012300.1

Overview
NameTc06v2_t012300.1
Unique NameTc06v2_t012300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length675
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productcalcyclin-binding protein, transcript variant X2
NoteSGS domain-containing protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596499
GenbankXM_018123612.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g012300Tc06v2_g012300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p012300.1Tc06v2_p012300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto337781auto337781Theobroma cacaoexon
exon-auto337782auto337782Theobroma cacaoexon
exon-auto337783auto337783Theobroma cacaoexon
exon-auto337784auto337784Theobroma cacaoexon
exon-auto337785auto337785Theobroma cacaoexon
exon-auto337786auto337786Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto337787auto337787Theobroma cacaoCDS
CDS-auto337788auto337788Theobroma cacaoCDS
CDS-auto337789auto337789Theobroma cacaoCDS
CDS-auto337790auto337790Theobroma cacaoCDS
CDS-auto337791auto337791Theobroma cacaoCDS
CDS-auto337792auto337792Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t012300.1 ID=Tc06v2_t012300.1|Name=Tc06v2_t012300.1|organism=Theobroma cacao|type=mRNA|length=675bp
ATGGCGGAGGAATTGGCGCTTGATTTAGAGGAGCTTAGGCAACTCCAAAG
CATCGCAAAGAGGCCACGTATTCTATCTCTTCTTTCCTCCGAAATTCGCA
ACTTGGAAAAGTTGCAGACATCAAACGAGGTTGCAAAGGCACCTACTCCT
GCTACTGTTTCACAAATTCCAACTCCCATATCAACTTCAGGTAAGGTTCC
TGTTAACCCAGCATTGAGTTATGTAACGCTCGCCTCGTTCAGCTGGGATC
AGGATAATGATAAAGTCAAGATATATGTCTCTCTAGAAGGAGTTAACCAG
GAAAAAATTCAGACAGAGTTCAAGCCAATGTCATTTGATGTTAAATTTCA
TGACGTCCAAGGAAAGAACTATCGATGTGCCATTCCGAAATTGAATAAAG
ACATTGTACCAGAAAAGTGCAAGGTGTTAGTCAAGCCTACAAGAGTCGTC
ATCACATTGTTCAAAGCTTCCAAAGGGAACTGGTCTGATCTGCACTACAA
GGAGGACAAGCTGAAGCCAAATTTGGATAAAGAACGAGATCCCATGGCTG
GAATCATGGACTTAATGAAGAATATGTATGAGGACGGTGATGATGACATG
AAGAGAACAATTGCCAAAGCATGGACTGATGCAAGGTCTGGCAAAACAGC
AGACCCTCTGAAAGGTTACCGGTGA
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protein sequence of Tc06v2_p012300.1

>Tc06v2_p012300.1 ID=Tc06v2_p012300.1|Name=Tc06v2_p012300.1|organism=Theobroma cacao|type=polypeptide|length=225bp
MAEELALDLEELRQLQSIAKRPRILSLLSSEIRNLEKLQTSNEVAKAPTP
ATVSQIPTPISTSGKVPVNPALSYVTLASFSWDQDNDKVKIYVSLEGVNQ
EKIQTEFKPMSFDVKFHDVQGKNYRCAIPKLNKDIVPEKCKVLVKPTRVV
ITLFKASKGNWSDLHYKEDKLKPNLDKERDPMAGIMDLMKNMYEDGDDDM
KRTIAKAWTDARSGKTADPLKGYR*
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