Tc06v2_t012250.1

Overview
NameTc06v2_t012250.1
Unique NameTc06v2_t012250.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2460
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productcullin-4
NoteCullin-4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596492
GenbankXM_007025002.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g012250Tc06v2_g012250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p012250.1Tc06v2_p012250.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto337700auto337700Theobroma cacaoexon
exon-auto337701auto337701Theobroma cacaoexon
exon-auto337702auto337702Theobroma cacaoexon
exon-auto337703auto337703Theobroma cacaoexon
exon-auto337704auto337704Theobroma cacaoexon
exon-auto337705auto337705Theobroma cacaoexon
exon-auto337706auto337706Theobroma cacaoexon
exon-auto337707auto337707Theobroma cacaoexon
exon-auto337708auto337708Theobroma cacaoexon
exon-auto337709auto337709Theobroma cacaoexon
exon-auto337710auto337710Theobroma cacaoexon
exon-auto337711auto337711Theobroma cacaoexon
exon-auto337712auto337712Theobroma cacaoexon
exon-auto337713auto337713Theobroma cacaoexon
exon-auto337714auto337714Theobroma cacaoexon
exon-auto337715auto337715Theobroma cacaoexon
exon-auto337716auto337716Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto337717auto337717Theobroma cacaoCDS
CDS-auto337718auto337718Theobroma cacaoCDS
CDS-auto337719auto337719Theobroma cacaoCDS
CDS-auto337720auto337720Theobroma cacaoCDS
CDS-auto337721auto337721Theobroma cacaoCDS
CDS-auto337722auto337722Theobroma cacaoCDS
CDS-auto337723auto337723Theobroma cacaoCDS
CDS-auto337724auto337724Theobroma cacaoCDS
CDS-auto337725auto337725Theobroma cacaoCDS
CDS-auto337726auto337726Theobroma cacaoCDS
CDS-auto337727auto337727Theobroma cacaoCDS
CDS-auto337728auto337728Theobroma cacaoCDS
CDS-auto337729auto337729Theobroma cacaoCDS
CDS-auto337730auto337730Theobroma cacaoCDS
CDS-auto337731auto337731Theobroma cacaoCDS
CDS-auto337732auto337732Theobroma cacaoCDS
CDS-auto337733auto337733Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t012250.1 ID=Tc06v2_t012250.1|Name=Tc06v2_t012250.1|organism=Theobroma cacao|type=mRNA|length=2460bp
ATGTCTCTCCCCCCTACCAAACGCTCTCTGAGCAACGCTAATTCCAACGC
CACTGCTTCTTCTTCTTCCTCCTCTTCTCCTCACTTCCACCCATCAATGA
AGAAAGCCAAGTCCCAAGCCGTCGCTTGCTCTCTAGACCCAAACAAGAAC
GGCCTTCACCACCACCACAACCAAGACGATAACGACGTCGTTTTCGACCC
TTCATCTATGGCCCTCGACGATGATTCCAAGCCCGACGATGCTCGTGCTC
CCGCCGCCGCTAATTTGTCTCGCAAAAAAGCAACCCCCCCTCAACCCGCC
AAGAAGCTTGTCATCAAACTCGTTAAAGCAAAACCGACATTGCCCACAAA
TTTTGAGGAGGAAACATGGGCAAAGCTGAAGTCAGCCATAAATGCTATAT
TTTTGAAACAACCAGATTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTC
AATAATCTTTGCCTGCACAAGATGGGAGGAAGCCTTTATCAACGAATTGA
AAAAGAGTGTGAAGAACATATATCTGCGGCATTAAGATCTTTAGTTGGGC
AAAGCCCAGATCTGGTGGTTTTCTTATCACTTGTTGAGAAATGTTGGCAA
GATCTTTGTGATCAAATGTTGATGATTCGCGGTATAGCCTTGTATCTAGA
CAGAACATATGTTAAACAAACCCCAAATGTACGTTCATTGTGGGACATGG
GCTTGCAGCTCTTCCGGAAACATCTATCGCTTGCTTCTGAAGTTGAGCAC
AAAACTGTCACTGGTCTTTTAAGAATGATTGAGAGTGAGAGATTAGGTGA
AGCAGTTGAGAGGACGCTCCTTAACCATCTTTTGAAGATGTTTACTGCTT
TAGGTATTTACTCAGAAAGCTTTGAGAAGCCATTCCTGGAGTGCACATCT
GAGTTTTATGCAGCTGAAGGAATGAAATACATGCAGCAATCTGATGTTCC
AGATTACCTGAAGCATGTGGAGATGAGGTTACATGAAGAACATGAAAGAT
GCTTACTCTACCTGGATGCTCTTACAAGAAAGCCACTTATAGCAACAGCA
GAGAGGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGATT
TATGATGCTGATGGATGGGCATCGTATTGAGGACCTTCAGAGGATGTACT
CACTATTTTCAAGGGTCAATGCTCTTGAATCACTCAGGCAGGCCCTAAGC
TCATATATTCGGAGAACTGGGCAAGGCATTGTCTTGGATGAAGAGAAAGA
CAAGGACATGGTGCCTTCCTTGTTAGAATTCAAGGCTTCACTTGACTCGA
TATGGGAAGAAAGCTTTTCCAAGAATGAGGCATTTTGCAATACTATCAAG
GATGCATTTGAGCATCTAATTAACCTTCGTCAGAATCGACCTGCTGAGCT
GATTGCAAAGTTTTTGGATGAAAAACTCCGTGCTGGTAATAAGGGTACTT
CTGAAGAGGAATTAGAGGGTACACTTGATAAAGTTTTGGTTTTATTTAGG
TTCATCCAGGGCAAGGATGTCTTTGAAGCATTCTATAAGAAGGATCTTGC
AAAACGGCTGCTGTTAGGAAAGAGTGCTTCTATTGATGCGGAGAAATCCA
TGATTTCTAAGCTGAAGACTGAGTGTGGCAGCCAGTTTACAAACAAACTT
GAAGGAATGTTCAAGGATATTGAACTATCAAAGGAGATAAATGAATCATT
CAAGCAGTCATCCCAGGCCCGGATAAAACTTCCATCAGGAATTGAGATGA
GTGTCCATGTCTTAACAACAGGGTACTGGCCCACATATCCACCTATGGAT
GTTAGGCTTCCTCATGAATTGAATGTCTATCAGGACATCTTTAAGGAATT
CTACTTAAGCAAGTACAGTGGGAGGCGCCTAATGTGGCAAAATTCATTAG
GTCATTGTGTGTTGAAAGCAGATTTTCCTAAAGGTAAAAAGGAGCTGGCA
GTTTCCCTATTTCAGACTGTAGTTCTGATGTTGTTCAACGATGCCCAAAA
GCTTAGCTTTCAAGACATTAAGGACTCCACTGGCATAGAGGATAAGGAAT
TGAGAAGGACCTTGCAGTCCCTTGCTTGTGGCAAAGTACGAGTCCTTCAA
AAGTTGCCAAAAGGGAGGGACGTGGAGGATGATGATTCATTCGTTTTCAA
TGAGGGATTTACTGCTCCTCTCTATCGTTTAAAGGTAAATGCAATCCAGA
TGAAAGAGACAGTTGAGGAGAACACAAGCACTACTGAAAGAGTATTTCAA
GACCGTCAATATCAGGTTGATGCTGCTATTGTTCGGATAATGAAGACGAG
GAAAGTGTTGAGTCACACTCTTCTGATAACTGAACTCTTCCAACAGCTTA
AGTTTCCCATAAAACCGGCTGATTTGAAGAAAAGAATCGAGTCTCTCATT
GACAGGGAGTACCTGGAGCGGGACAAGAACAACCCACAGATATACAATTA
CCTGGCATAG
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protein sequence of Tc06v2_p012250.1

>Tc06v2_p012250.1 ID=Tc06v2_p012250.1|Name=Tc06v2_p012250.1|organism=Theobroma cacao|type=polypeptide|length=820bp
MSLPPTKRSLSNANSNATASSSSSSSPHFHPSMKKAKSQAVACSLDPNKN
GLHHHHNQDDNDVVFDPSSMALDDDSKPDDARAPAAANLSRKKATPPQPA
KKLVIKLVKAKPTLPTNFEEETWAKLKSAINAIFLKQPDSCDLEKLYQAV
NNLCLHKMGGSLYQRIEKECEEHISAALRSLVGQSPDLVVFLSLVEKCWQ
DLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKHLSLASEVEH
KTVTGLLRMIESERLGEAVERTLLNHLLKMFTALGIYSESFEKPFLECTS
EFYAAEGMKYMQQSDVPDYLKHVEMRLHEEHERCLLYLDALTRKPLIATA
ERQLLERHIPAILDKGFMMLMDGHRIEDLQRMYSLFSRVNALESLRQALS
SYIRRTGQGIVLDEEKDKDMVPSLLEFKASLDSIWEESFSKNEAFCNTIK
DAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFR
FIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKL
EGMFKDIELSKEINESFKQSSQARIKLPSGIEMSVHVLTTGYWPTYPPMD
VRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELA
VSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQ
KLPKGRDVEDDDSFVFNEGFTAPLYRLKVNAIQMKETVEENTSTTERVFQ
DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLI
DREYLERDKNNPQIYNYLA*
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