Tc06v2_t011930.1

Overview
NameTc06v2_t011930.1
Unique NameTc06v2_t011930.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1167
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productsolanesyl diphosphate synthase 3, chloroplastic/mitochondrial, transcript variant X2
NoteSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596448
GenbankXM_007024921.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g011930Tc06v2_g011930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p011930.1Tc06v2_p011930.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto337005auto337005Theobroma cacaoexon
exon-auto337006auto337006Theobroma cacaoexon
exon-auto337007auto337007Theobroma cacaoexon
exon-auto337008auto337008Theobroma cacaoexon
exon-auto337009auto337009Theobroma cacaoexon
exon-auto337010auto337010Theobroma cacaoexon
exon-auto337011auto337011Theobroma cacaoexon
exon-auto337012auto337012Theobroma cacaoexon
exon-auto337013auto337013Theobroma cacaoexon
exon-auto337014auto337014Theobroma cacaoexon
exon-auto337015auto337015Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto337016auto337016Theobroma cacaoCDS
CDS-auto337017auto337017Theobroma cacaoCDS
CDS-auto337018auto337018Theobroma cacaoCDS
CDS-auto337019auto337019Theobroma cacaoCDS
CDS-auto337020auto337020Theobroma cacaoCDS
CDS-auto337021auto337021Theobroma cacaoCDS
CDS-auto337022auto337022Theobroma cacaoCDS
CDS-auto337023auto337023Theobroma cacaoCDS
CDS-auto337024auto337024Theobroma cacaoCDS
CDS-auto337025auto337025Theobroma cacaoCDS
CDS-auto337026auto337026Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t011930.1 ID=Tc06v2_t011930.1|Name=Tc06v2_t011930.1|organism=Theobroma cacao|type=mRNA|length=1167bp
ATGACTATTCTATTTTCTCGGGTAGTTTCTAGGATTTCGGGGACCCCCAA
GAAAACCTTTTTTAACTGCCCTCAACTCTGCCAAGCTCTTGTCTTTGGCA
CTAGTTGTCGCTCTCCCACTGATTCTACTCCCAAGGACAAGGTGGACCCG
TTTTCACTCGTTGCTCATGAAATGTCACTGGTTTCAAAGAGGTTGCGTTC
ATCTGTAGTTGCTCAGGTCCCGGAGCTTGCCTCAGCTGCTGGATACTTCT
TCAAAGAGGGGGTGGAAGGAAAGAGGACATGCTCTGCGGTCTTGCTATTG
ATGGCTACAGCTGTGGATATACATAGACCTGAATCACCTTTTTGCTGCAT
TGGAGATACATGGACAATTGAACTGCGTAGAAGACAGCAACTTATTGCTG
AAATAACCGAGATGATCCATGTGGCTAGCCTTATTCATGATGATGTCTTG
GATGATGCAGATACAAGACGTGGAATTGGTTCATTAAGTTTTGTGGTTGG
AAATAAGTTAGCAGTGTTGGCCGGAGATTTTCTGCTTTTTCGAGCTCTTA
GGACCCTTGCTTCCTTGAAAAACACAGAGGTTGTGTCATTACTAGTAACA
GCAATAGAGAATCTTGTTACTGGTGAAACTATGCAAATGGCAGCCACAAT
TGAGCAGCGCTGTAGCATGGAGTATTATATGCAAAAGACATACTACAAGA
CTGCATCGTTGATTTCAAACAGCTGCAAGGCTATTGCCCTTCTGTCTGGC
CAAACACCTGGAGTTGCAAAGTTGGCTTTTGAATATGGCAAAAATTTGGG
ATTGGCATATCAATTCATAGATGATATTCTTGATTTCACAGGCTCATCAG
CTTCCCTTGGAAAGGGTTCTTTATCTGACATACGACTGGGGATCATAACT
GCTCCTATATTATTTGCAACAGAAGAGTTTCCTCAGTTGCATGCTGTCAT
TGAGCAGGGCTTCGACGACCCTGCCAATGTCGACACCGCTCTCGAGTACC
TACGGAAGAGCCGTGGAATACAAAGGACGAGAGAGCTAGCAACAAAGCAT
GCTAGTCTTGCAGCTGCAGCTATTGATTCTCTGCCTGAAAGCTGCAGCAT
GGATGTAAGGAAGTCAAGGCAGGCTCTCATTAATCTCACTCAAATACTCA
CCGCAAGGAATAAATGA
back to top

protein sequence of Tc06v2_p011930.1

>Tc06v2_p011930.1 ID=Tc06v2_p011930.1|Name=Tc06v2_p011930.1|organism=Theobroma cacao|type=polypeptide|length=389bp
MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTPKDKVDP
FSLVAHEMSLVSKRLRSSVVAQVPELASAAGYFFKEGVEGKRTCSAVLLL
MATAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVL
DDADTRRGIGSLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEVVSLLVT
AIENLVTGETMQMAATIEQRCSMEYYMQKTYYKTASLISNSCKAIALLSG
QTPGVAKLAFEYGKNLGLAYQFIDDILDFTGSSASLGKGSLSDIRLGIIT
APILFATEEFPQLHAVIEQGFDDPANVDTALEYLRKSRGIQRTRELATKH
ASLAAAAIDSLPESCSMDVRKSRQALINLTQILTARNK*
back to top