Tc06v2_t010700.2

Overview
NameTc06v2_t010700.2
Unique NameTc06v2_t010700.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length717
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2 34, transcript variant X1
NoteUbiquitin-conjugating enzyme E2 34
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596318
GenbankXM_007024717.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g010700Tc06v2_g010700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p010700.2Tc06v2_p010700.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto333998auto333998Theobroma cacaoexon
exon-auto333999auto333999Theobroma cacaoexon
exon-auto334000auto334000Theobroma cacaoexon
exon-auto334001auto334001Theobroma cacaoexon
exon-auto334002auto334002Theobroma cacaoexon
exon-auto334003auto334003Theobroma cacaoexon
exon-auto334004auto334004Theobroma cacaoexon
exon-auto334005auto334005Theobroma cacaoexon
exon-auto334006auto334006Theobroma cacaoexon
exon-auto334007auto334007Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto334008auto334008Theobroma cacaoCDS
CDS-auto334009auto334009Theobroma cacaoCDS
CDS-auto334010auto334010Theobroma cacaoCDS
CDS-auto334011auto334011Theobroma cacaoCDS
CDS-auto334012auto334012Theobroma cacaoCDS
CDS-auto334013auto334013Theobroma cacaoCDS
CDS-auto334014auto334014Theobroma cacaoCDS
CDS-auto334015auto334015Theobroma cacaoCDS
CDS-auto334016auto334016Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t010700.2 ID=Tc06v2_t010700.2|Name=Tc06v2_t010700.2|organism=Theobroma cacao|type=mRNA|length=717bp
ATGGCAGAGAAATCGTGTGTTAAGCGCCTTCAGAAGGAATATAGAGCACT
GTGTAAAGAACCAGTTTCTCATGTGGTTGCCCGTCCATCCCCAAATGACA
TTCTTGAGTGGCATTATGTGCTGGAGGGGAGTGAAGGAACACCTTTTGCA
GGTGGGTATTACTATGGAAAGATCAAGTTCCCTCCAGAGTATCCCTACAA
ACCTCCTGGAATCACCATGATTACCCCCAATGGACGGTTTATGACACAGA
AGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCT
ATGTGGTCTGTGTCAAGCATACTCACAGGGCTTCTTTCTTTCATGATGGA
TAACAGTCCTACCACCGGCAGTGTGAACACTACTGCTGCTGAGAAGCAAC
GTCTGGCAAAGGCATCCCTTGCTTTTAATTGTAAGAACCCAACATTCAGA
AAATTGTTTCCAGAGTATGTGGATAAGTACAACAAGCAGCAGCAGCAGCA
GCTTGTTTCAGAGCATTTATCACCAGAATCAACTAAAGAAGAAAATTTGA
AACCTGAGGCAGAAAAACGTGTCAAGTCTTCAGTGGAGGATGGTAAAAGA
GTAGATCCCCTGAGGGATACAAGAAGAAACAGAAAACAGTCATTCCCAAC
GTGGATGATGTTGTTGCTAGTTTCCATCTTTGGCATTGTAATGGCATTGC
CGCTGCTTCAACTTTGA
back to top

protein sequence of Tc06v2_p010700.2

>Tc06v2_p010700.2 ID=Tc06v2_p010700.2|Name=Tc06v2_p010700.2|organism=Theobroma cacao|type=polypeptide|length=239bp
MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFA
GGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNP
MWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFR
KLFPEYVDKYNKQQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKR
VDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL*
back to top