Tc06v2_t010700.1

Overview
NameTc06v2_t010700.1
Unique NameTc06v2_t010700.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length717
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2 34, transcript variant X2
NoteUbiquitin-conjugating enzyme E2 34
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596318
GenbankXM_007024716.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g010700Tc06v2_g010700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p010700.1Tc06v2_p010700.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto333976auto333976Theobroma cacaoexon
exon-auto333977auto333977Theobroma cacaoexon
exon-auto333978auto333978Theobroma cacaoexon
exon-auto333979auto333979Theobroma cacaoexon
exon-auto333980auto333980Theobroma cacaoexon
exon-auto333981auto333981Theobroma cacaoexon
exon-auto333982auto333982Theobroma cacaoexon
exon-auto333983auto333983Theobroma cacaoexon
exon-auto333984auto333984Theobroma cacaoexon
exon-auto333985auto333985Theobroma cacaoexon
exon-auto333986auto333986Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto333987auto333987Theobroma cacaoCDS
CDS-auto333988auto333988Theobroma cacaoCDS
CDS-auto333989auto333989Theobroma cacaoCDS
CDS-auto333990auto333990Theobroma cacaoCDS
CDS-auto333991auto333991Theobroma cacaoCDS
CDS-auto333992auto333992Theobroma cacaoCDS
CDS-auto333993auto333993Theobroma cacaoCDS
CDS-auto333994auto333994Theobroma cacaoCDS
CDS-auto333995auto333995Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t010700.1 ID=Tc06v2_t010700.1|Name=Tc06v2_t010700.1|organism=Theobroma cacao|type=mRNA|length=717bp
ATGGCAGAGAAATCGTGTGTTAAGCGCCTTCAGAAGGAATATAGAGCACT
GTGTAAAGAACCAGTTTCTCATGTGGTTGCCCGTCCATCCCCAAATGACA
TTCTTGAGTGGCATTATGTGCTGGAGGGGAGTGAAGGAACACCTTTTGCA
GGTGGGTATTACTATGGAAAGATCAAGTTCCCTCCAGAGTATCCCTACAA
ACCTCCTGGAATCACCATGATTACCCCCAATGGACGGTTTATGACACAGA
AGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCT
ATGTGGTCTGTGTCAAGCATACTCACAGGGCTTCTTTCTTTCATGATGGA
TAACAGTCCTACCACCGGCAGTGTGAACACTACTGCTGCTGAGAAGCAAC
GTCTGGCAAAGGCATCCCTTGCTTTTAATTGTAAGAACCCAACATTCAGA
AAATTGTTTCCAGAGTATGTGGATAAGTACAACAAGCAGCAGCAGCAGCA
GCTTGTTTCAGAGCATTTATCACCAGAATCAACTAAAGAAGAAAATTTGA
AACCTGAGGCAGAAAAACGTGTCAAGTCTTCAGTGGAGGATGGTAAAAGA
GTAGATCCCCTGAGGGATACAAGAAGAAACAGAAAACAGTCATTCCCAAC
GTGGATGATGTTGTTGCTAGTTTCCATCTTTGGCATTGTAATGGCATTGC
CGCTGCTTCAACTTTGA
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protein sequence of Tc06v2_p010700.1

>Tc06v2_p010700.1 ID=Tc06v2_p010700.1|Name=Tc06v2_p010700.1|organism=Theobroma cacao|type=polypeptide|length=239bp
MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFA
GGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNP
MWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFR
KLFPEYVDKYNKQQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKR
VDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL*
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