Tc06v2_t010240.5

Overview
NameTc06v2_t010240.5
Unique NameTc06v2_t010240.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length912
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productperoxisomal (S)-2-hydroxy-acid oxidase GLO4, transcript variant X4
NotePeroxisomal (S)-2-hydroxy-acid oxidase GLO4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596266
GenbankXM_007024640.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g010240Tc06v2_g010240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p010240.5Tc06v2_p010240.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto332946auto332946Theobroma cacaoexon
exon-auto332947auto332947Theobroma cacaoexon
exon-auto332948auto332948Theobroma cacaoexon
exon-auto332949auto332949Theobroma cacaoexon
exon-auto332950auto332950Theobroma cacaoexon
exon-auto332951auto332951Theobroma cacaoexon
exon-auto332952auto332952Theobroma cacaoexon
exon-auto332953auto332953Theobroma cacaoexon
exon-auto332954auto332954Theobroma cacaoexon
exon-auto332955auto332955Theobroma cacaoexon
exon-auto332956auto332956Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto332957auto332957Theobroma cacaoCDS
CDS-auto332958auto332958Theobroma cacaoCDS
CDS-auto332959auto332959Theobroma cacaoCDS
CDS-auto332960auto332960Theobroma cacaoCDS
CDS-auto332961auto332961Theobroma cacaoCDS
CDS-auto332962auto332962Theobroma cacaoCDS
CDS-auto332963auto332963Theobroma cacaoCDS
CDS-auto332964auto332964Theobroma cacaoCDS
CDS-auto332965auto332965Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t010240.5 ID=Tc06v2_t010240.5|Name=Tc06v2_t010240.5|organism=Theobroma cacao|type=mRNA|length=912bp
ATGGCAGCAGAACCTGTTAATGTCAATGAATTCCGAGAATTAGCAAGGCG
AGCGCTTCCAAAAATGTACTATGATTTCTACAGTGGAGGAGCAGAGGACC
AATACACCTTAAAAGAGAATGAGGAAGCGTTCGGCAAAATCATTATTCTG
CCTAGAATTCTTCGAGATGTGAGCGGCATTGATTTATCAACTACTGTATT
GGGTTACAATATCTCAATGCCAGTTATGATTGCCCCAACTGGGATGCATA
AGCTGGCAAACCCTGCAGGAGAGATTGCAACGGCCAAAGCAGCATCTGCC
TGTAAAACAATAATGGTTTTATCCAGCGCATCTACCTGCACATTGGAGGA
AGTAGCTGCCTGCTGCAATGCTGTTCGCTTTTTCCAATTATATGATGGTG
GTTCAGGTTTAGAAGCTCTGGCCAGAGGGACTCTTGATCCTTCTTTCTGT
TGGGAGGACATCCGATGGTTGAAATCTATTACAAACTTGCCAATTCTGAT
CAAAGGAGTACTCACTCATGAAGATGCAATAAAGGCTCTGGAAGTAGGTG
TTGCTGGGATTATTGTCTCCAATCATGGAGCCCGTCAGCTAGATTATTCT
CCTGCCACTATTTCTGTTCTGGAAGAGGTAGTTCACGCTGTTGGAGGAAA
AGTTCCTGTTTTCCTCGATGGAGGAGTGCGGCGAGGAACAGATATTTTCA
AGGCAGTGGCCCTTGGTGCACAAGCTGTCCTAGTTGGAAGGCCAGTTCTT
TATGGACTTGCGGCGAAAGGAGAATATGGAGTCAGACAAGTCCTTGAAAT
GCTCATGGATGAGCTTGAACTCACAATGGCCCTCTCTGGTTGTTCGAGTG
TGAAAGAAATTACTAGGAGCCATGTCAGGACCAAACATGAGCAGCTCCTC
TCAATGCTTTAA
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protein sequence of Tc06v2_p010240.5

>Tc06v2_p010240.5 ID=Tc06v2_p010240.5|Name=Tc06v2_p010240.5|organism=Theobroma cacao|type=polypeptide|length=304bp
MAAEPVNVNEFRELARRALPKMYYDFYSGGAEDQYTLKENEEAFGKIIIL
PRILRDVSGIDLSTTVLGYNISMPVMIAPTGMHKLANPAGEIATAKAASA
CKTIMVLSSASTCTLEEVAACCNAVRFFQLYDGGSGLEALARGTLDPSFC
WEDIRWLKSITNLPILIKGVLTHEDAIKALEVGVAGIIVSNHGARQLDYS
PATISVLEEVVHAVGGKVPVFLDGGVRRGTDIFKAVALGAQAVLVGRPVL
YGLAAKGEYGVRQVLEMLMDELELTMALSGCSSVKEITRSHVRTKHEQLL
SML*
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