Tc06v2_t010240.1

Overview
NameTc06v2_t010240.1
Unique NameTc06v2_t010240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length948
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productperoxisomal (S)-2-hydroxy-acid oxidase GLO4, transcript variant X3
NotePeroxisomal (S)-2-hydroxy-acid oxidase GLO4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596266
GenbankXM_018123322.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g010240Tc06v2_g010240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p010240.1Tc06v2_p010240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto332848auto332848Theobroma cacaoexon
exon-auto332849auto332849Theobroma cacaoexon
exon-auto332850auto332850Theobroma cacaoexon
exon-auto332851auto332851Theobroma cacaoexon
exon-auto332852auto332852Theobroma cacaoexon
exon-auto332853auto332853Theobroma cacaoexon
exon-auto332854auto332854Theobroma cacaoexon
exon-auto332855auto332855Theobroma cacaoexon
exon-auto332856auto332856Theobroma cacaoexon
exon-auto332857auto332857Theobroma cacaoexon
exon-auto332858auto332858Theobroma cacaoexon
exon-auto332859auto332859Theobroma cacaoexon
exon-auto332860auto332860Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto332861auto332861Theobroma cacaoCDS
CDS-auto332862auto332862Theobroma cacaoCDS
CDS-auto332863auto332863Theobroma cacaoCDS
CDS-auto332864auto332864Theobroma cacaoCDS
CDS-auto332865auto332865Theobroma cacaoCDS
CDS-auto332866auto332866Theobroma cacaoCDS
CDS-auto332867auto332867Theobroma cacaoCDS
CDS-auto332868auto332868Theobroma cacaoCDS
CDS-auto332869auto332869Theobroma cacaoCDS
CDS-auto332870auto332870Theobroma cacaoCDS
CDS-auto332871auto332871Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t010240.1 ID=Tc06v2_t010240.1|Name=Tc06v2_t010240.1|organism=Theobroma cacao|type=mRNA|length=948bp
ATGGCAGCAGAACCTGTTAATGTCAATGAATTCCGAGAATTAGCAAGGCG
AGCGCTTCCAAAAATGTACTATGATTTCTACAGTGGAGGAGCAGAGGACC
AATACACCTTAAAAGAGAATGAGGAAGCGTTCGGCAAAATCATTATTCTG
CCTAGAATTCTTCGAGATGTGAGCGGCATTGATTTATCAACTACTGTATT
GGGTTACAATATCTCAATGCCAGTTATGATTGCCCCAACTGGGATGCATA
AGCTGGCAAACCCTGCAGGAGAGATTGCAACGGCCAAAGCAGCATCTGCC
TGTAAAACAATAATGGTTTTATCCAGCGCATCTACCTGCACATTGGAGGA
AGTAGCTGCCTGCTGCAATGCTGTTCGCTTTTTCCAATTATATGTGTATA
AGAGACGAGATATATCAGCTAAGCTGGTGCAGAGAGCTGAAAATAATGGA
TATAAGGCTATTGTCCTAACTGCTGATAGTCCAAGACTTGGTCGAAGGGA
GGCAGACATTAAGAATAAACTCGTTGTGCCTCAGCCGAAGAACCTGGAGG
GTCTATTATCAACTAAATCTGTTTCTGATGGTGGTTCAGGTTTAGAAGCT
CTGGCCAGAGGGACTCTTGATCCTTCTTTCTGTTGGGAGGACATCCGATG
GTTGAAATCTATTACAAACTTGCCAATTCTGATCAAAGGAGTACTCACTC
ATGAAGATGCAATAAAGGCTCTGGAAGTAGGTGTTGCTGGGATTATTGTC
TCCAATCATGGAGCCCGTCAGCTAGATTATTCTCCTGCCACTATTTCTGT
TCTGGAAGAGGTAGTTCACGCTGTTGGAGGAAAAGTTCCTGTTTTCCTCG
ATGGAGGAGTGCGGCGAGGAACAGATATTTTCAAGGCAGTGGCCCTTGGT
GCACAAGCTGTCCTAGACACCTTCGTATGTACTGTATGTATGGTGTAG
back to top

protein sequence of Tc06v2_p010240.1

>Tc06v2_p010240.1 ID=Tc06v2_p010240.1|Name=Tc06v2_p010240.1|organism=Theobroma cacao|type=polypeptide|length=316bp
MAAEPVNVNEFRELARRALPKMYYDFYSGGAEDQYTLKENEEAFGKIIIL
PRILRDVSGIDLSTTVLGYNISMPVMIAPTGMHKLANPAGEIATAKAASA
CKTIMVLSSASTCTLEEVAACCNAVRFFQLYVYKRRDISAKLVQRAENNG
YKAIVLTADSPRLGRREADIKNKLVVPQPKNLEGLLSTKSVSDGGSGLEA
LARGTLDPSFCWEDIRWLKSITNLPILIKGVLTHEDAIKALEVGVAGIIV
SNHGARQLDYSPATISVLEEVVHAVGGKVPVFLDGGVRRGTDIFKAVALG
AQAVLDTFVCTVCMV*
back to top