Tc06v2_t009690.1

Overview
NameTc06v2_t009690.1
Unique NameTc06v2_t009690.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length918
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productomega-amidase, chloroplastic
NoteOmega-amidase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596203
GenbankXM_007024532.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g009690Tc06v2_g009690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p009690.1Tc06v2_p009690.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto331749auto331749Theobroma cacaoexon
exon-auto331750auto331750Theobroma cacaoexon
exon-auto331751auto331751Theobroma cacaoexon
exon-auto331752auto331752Theobroma cacaoexon
exon-auto331753auto331753Theobroma cacaoexon
exon-auto331754auto331754Theobroma cacaoexon
exon-auto331755auto331755Theobroma cacaoexon
exon-auto331756auto331756Theobroma cacaoexon
exon-auto331757auto331757Theobroma cacaoexon
exon-auto331758auto331758Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto331759auto331759Theobroma cacaoCDS
CDS-auto331760auto331760Theobroma cacaoCDS
CDS-auto331761auto331761Theobroma cacaoCDS
CDS-auto331762auto331762Theobroma cacaoCDS
CDS-auto331763auto331763Theobroma cacaoCDS
CDS-auto331764auto331764Theobroma cacaoCDS
CDS-auto331765auto331765Theobroma cacaoCDS
CDS-auto331766auto331766Theobroma cacaoCDS
CDS-auto331767auto331767Theobroma cacaoCDS
CDS-auto331768auto331768Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t009690.1 ID=Tc06v2_t009690.1|Name=Tc06v2_t009690.1|organism=Theobroma cacao|type=mRNA|length=918bp
ATGCCTACTTACATACAAGGTCAACAGCATCAAACTTCAGCTTGTGCTTC
CTTGAATACGATGGAAGTTCCCACTATTTCCAAGTTTAAAGTTGGGCTTT
GCCAGTTGACTGTTAGTTCAGACAAGAATCAGAATCTAATCCGTGCCCAC
AATTTGATCAAAGTTGCTGCTCAGCAAGGTGCAAGGCTTGTCGTTTTACC
CGAAATGTGGAACTGCCCTTACTCGGCTGATGACTTTGCTAAGTATGCTG
AGGATTTTGAAAATGGAGATTCCTCGCCCTCCTTTTCAGTGTTATCAGAG
GTTGCTTCGTGCTATGGAATCACAATTGTTGGTGGGTCTATTCCAGAATG
GTGCAATGGCCGGCTGTATAATACTTGCTGTGTTTTTGGACCAGATGGAA
AGCTCAAGGCTAAGCATAGGAAGATTCATCTGTTTGATATTGATGTCCCA
GGAGATATTTCATTCAAGGAATCTGACTCCTTTGCTGCCGGAGATGAGCC
TACGATTGTGGACACAGACATTGGCCGAATTGGAATTGGAATTTGTCATG
ATATGCGCTTTCCAGAGCTTGCCATGCTTTACAGAGCAAAAGGGGCACAT
ATTATATGCTATCCCGGGGCATTCAACATGAGTACTGGTGACTTGCTGTG
GGAACTTGTACAGCGAGCAAGGGCAGCTGACAACCAGTTATTTGTTGCCA
CTTGTTCACCCTCTCGAGATTCTGCTGGTTGCTATGCAATATGGGGACAT
TCTACTCTTGTATCACCGTTTGGAGAGATAATTGCAACCTCAGAACATGA
AGAGACAGTTGTGGTTGCAGAGATTGATTATTCTGAAATCCAACGTACCA
GAGAGAGCCTTCCACTGGAGAAACAAAGACGAGCAGATATTTATCGGTTT
ATTGAAATGGACCATTGA
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protein sequence of Tc06v2_p009690.1

>Tc06v2_p009690.1 ID=Tc06v2_p009690.1|Name=Tc06v2_p009690.1|organism=Theobroma cacao|type=polypeptide|length=306bp
MPTYIQGQQHQTSACASLNTMEVPTISKFKVGLCQLTVSSDKNQNLIRAH
NLIKVAAQQGARLVVLPEMWNCPYSADDFAKYAEDFENGDSSPSFSVLSE
VASCYGITIVGGSIPEWCNGRLYNTCCVFGPDGKLKAKHRKIHLFDIDVP
GDISFKESDSFAAGDEPTIVDTDIGRIGIGICHDMRFPELAMLYRAKGAH
IICYPGAFNMSTGDLLWELVQRARAADNQLFVATCSPSRDSAGCYAIWGH
STLVSPFGEIIATSEHEETVVVAEIDYSEIQRTRESLPLEKQRRADIYRF
IEMDH*
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