Tc06v2_t009490.3

Overview
NameTc06v2_t009490.3
Unique NameTc06v2_t009490.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1632
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprotein phosphatase 2C 16, transcript variant X1
NoteProtein phosphatase 2C 16
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596179
GenbankXM_018123647.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g009490Tc06v2_g009490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p009490.3Tc06v2_p009490.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto331089auto331089Theobroma cacaoexon
exon-auto331090auto331090Theobroma cacaoexon
exon-auto331091auto331091Theobroma cacaoexon
exon-auto331092auto331092Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto331093auto331093Theobroma cacaoCDS
CDS-auto331094auto331094Theobroma cacaoCDS
CDS-auto331095auto331095Theobroma cacaoCDS
CDS-auto331096auto331096Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t009490.3 ID=Tc06v2_t009490.3|Name=Tc06v2_t009490.3|organism=Theobroma cacao|type=mRNA|length=1632bp
ATGGAAGAGATGTCTCCAGCAGTTGCAGTAACACTTAGTTTAGCTAATTC
TATGTGTGAGAACTCTGGAATTGCAACCCATGTGGAAATAACTCGGATCA
AGCTCGTAACTGATGCAGCAAACTTGTTGTCTGATCCTGCAAAGGTCATG
TCTCAGGAATCTGTTTCTAGTAGCAATGGAGATTCTGGAGTCGGTAAGAA
TGAAGGTAACCTGGCGACAATGTCAGCATCAGAAGAGGGTGGTGGGGAAG
GAGCTAATTTCTTGAAGATATTACCAGAGAATGGAAATCGATCAATTGGT
GCTAGTGAATCCATGACTCAGGAAAGTGAGGAAGATGAAATTTTGTCAGT
GGACGCTAATGGAATTATCAATGAGGGGTTGCTGGTTTTAAATGCAGGGT
CTGATATAAGCTTGCCAAATGCAGAAATTGAAAGTGGTCGAATTCTTGCC
AAGGCTATTATTTTGGGAGAGTCAAGCATTGAGCAGGTGCCTACAGCTGA
AGTTCTTCTCACCACGGTGAATCCAGATACAAAGACTTCTAATGAGTTTG
ATTTAAAGGCCTCTGAATTGGTCATTCAGCTACCTAGTGAAAAGAATCTC
AATAGAGGTAGCCGGAGTGTTTTTGAGTTGGATTGTATACCTCTTTGGGG
TTCTGTGTCTATTGTTGGGAAAAGAACAGAAATGGAGGATGCTGTTGCAG
CTGTGCCTCGGTTTATAAAGATTCCTATCAAAATGCTTATTGGTGATCGT
GTAATTGATGGAATCAGTCAAAGTCTGACAGACCTTACTGGACATTTTTT
TGGTGTTTATGATGGCCATGGTGGCTCCCAGGTGGCAAACTATTGTCGTG
ACCGTATTCATGTGGCTTTAGCTGAAGAGATTGGAAGCATTAAAGACAAT
TTATGTGATGGCACTAGTATGGAGAGTAGACAGGTGCGGTGGGAGAAGAC
CTTTACTAGTTGCTTTTTAAAGGTTGATGATGAAATTGGAGGAAATGTTA
ACAGAGGCATGATTGGAGGTGATGAAGATGCATCTGATGCCAGTTTTGAG
CCTGTTGCCCCTGAAACTGTTGGGTCAACAGCTGTGGTGGCCTTGGTTTG
TTCATCACATATTGTTGTTGCAAACTGTGGTGATTCAAGAGCTGTCTTAT
GCCGTGGCAAAGAAGCCATGGCATTATCAATTGATCACAAACCAAACAGA
GATGATGAGTATGCAAGGATTGAGGCATCCGGAGGCAAGGTTATTCAGTG
GAAAGGACACCGTGTATTTGGCGTTCTTGCAATGTCAAGGTCCATTGGTG
ATAGATATTTGAAACCATGGATTATCCCAGAACCAGAAGTTATGTTTATT
CCTCGAGCTAGAGAAGATGAATGTCTGATTTTGGCCAGTGATGGGTTGTG
GGATGTCATATCAAATGAGGAAGCTTGTGAGGTGGCTCGACGGCGAATTC
TGCTTTGGCACAAAAAGAATGGGGTTCCATCTCTCGTGGAAAGAGGCAAA
GGAATTGATCCTGCCGCGCAAGCAGCAGCTGAATACCTTTCAATGCTCGC
CGTCCAAAAAGGGAGCAGTGACAACATCTCTGTAATTGTTGTGGACTTGA
AAGCTCAAAGGAAGTTCAAGAGCAAACCGTAA
back to top

protein sequence of Tc06v2_p009490.3

>Tc06v2_p009490.3 ID=Tc06v2_p009490.3|Name=Tc06v2_p009490.3|organism=Theobroma cacao|type=polypeptide|length=544bp
MEEMSPAVAVTLSLANSMCENSGIATHVEITRIKLVTDAANLLSDPAKVM
SQESVSSSNGDSGVGKNEGNLATMSASEEGGGEGANFLKILPENGNRSIG
ASESMTQESEEDEILSVDANGIINEGLLVLNAGSDISLPNAEIESGRILA
KAIILGESSIEQVPTAEVLLTTVNPDTKTSNEFDLKASELVIQLPSEKNL
NRGSRSVFELDCIPLWGSVSIVGKRTEMEDAVAAVPRFIKIPIKMLIGDR
VIDGISQSLTDLTGHFFGVYDGHGGSQVANYCRDRIHVALAEEIGSIKDN
LCDGTSMESRQVRWEKTFTSCFLKVDDEIGGNVNRGMIGGDEDASDASFE
PVAPETVGSTAVVALVCSSHIVVANCGDSRAVLCRGKEAMALSIDHKPNR
DDEYARIEASGGKVIQWKGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFI
PRAREDECLILASDGLWDVISNEEACEVARRRILLWHKKNGVPSLVERGK
GIDPAAQAAAEYLSMLAVQKGSSDNISVIVVDLKAQRKFKSKP*
back to top